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View Protein Complex Details

Complex Overview

From Publication: Gavin A.C. et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature. 2006 Mar 30;440(7084):631-6. Epub 2006 Jan 22.
Notes: From the published set of protein complexes (core proteins only)
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

U6 snRNP 2.5268E-11 5 11 4 6292
U4/U6 x U5 tri-snRNP complex 2.7461E-9 5 32 4 6292
small nuclear ribonucleoprotein complex 4.5308E-8 5 63 4 6292
small nucleolar ribonucleoprotein complex 7.8162E-8 5 72 4 6292
ribonucleoprotein complex 3.5735E-6 5 514 5 6292
nucleolus 5.9889E-6 5 211 4 6292
nuclear lumen 1.2511E-4 5 453 4 6292
organelle lumen 5.503E-4 5 660 4 6292
intracellular organelle lumen 5.503E-4 5 660 4 6292
membrane-enclosed lumen 6.9283E-4 5 700 4 6292
macromolecular complex 1.1794E-3 5 1635 5 6292
non-membrane-bounded organelle 2.3579E-3 5 959 4 6292
intracellular non-membrane-bounded organelle 2.3579E-3 5 959 4 6292
nuclear part 4.0435E-3 5 1103 4 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

mRNA catabolic process 1.3697E-10 5 69 5 6292
RNA catabolic process 2.93E-10 5 80 5 6292
mRNA metabolic process 4.2473E-8 5 213 5 6292
cellular macromolecule catabolic process 1.2779E-7 5 265 5 6292
macromolecule catabolic process 2.1559E-7 5 294 5 6292
nuclear mRNA splicing, via spliceosome 2.8501E-7 5 99 4 6292
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.9684E-7 5 100 4 6292
RNA splicing, via transesterification reactions 3.9031E-7 5 107 4 6292
RNA splicing 9.1091E-7 5 132 4 6292
cellular catabolic process 1.2203E-6 5 415 5 6292
mRNA processing 1.7841E-6 5 156 4 6292
catabolic process 2.9879E-6 5 496 5 6292
RNA processing 6.2402E-5 5 380 4 6292
RNA metabolic process 7.942E-5 5 954 5 6292
gene expression 3.5034E-4 5 1283 5 6292
nucleic acid metabolic process 5.7208E-4 5 1415 5 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 9.5045E-4 5 1566 5 6292
cellular nitrogen compound metabolic process 1.7545E-3 5 1770 5 6292
nitrogen compound metabolic process 1.8612E-3 5 1791 5 6292
cellular macromolecule metabolic process 6.2991E-3 5 2285 5 6292
macromolecule metabolic process 7.2329E-3 5 2349 5 6292
regulation of translational initiation 8.7135E-3 5 11 1 6292
deadenylation-dependent decapping of nuclear-transcribed mRNA 8.7135E-3 5 11 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA binding 5.4355E-5 5 367 4 6292
nucleic acid binding 5.7016E-4 5 666 4 6292
binding 7.4489E-3 5 1294 4 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle