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View Protein Complex Details

Complex Overview

From Publication: Mewes, H. W. et al. MIPS: Analysis and annotation of proteins from whole genomes. Nucleic Acids Res. 32, D41-D44
Notes: MIPS hand-curated complex set. MIPS complex ID: 90.20
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
VAM6
  • fungal-type vacuole
  • vacuolar membrane
  • HOPS complex
    		•
  • vacuole organization
  • telomere maintenance
  • vacuole fusion, non-autophagic
    		•
  • Rab guanyl-nucleotide exchange factor activity
    		•
    VPS41
  • endosome
  • fungal-type vacuole
  • vacuolar membrane
  • HOPS complex
    		•
  • vacuolar protein processing
  • vacuole organization
  • protein transport
  • vacuole fusion, non-autophagic
    		•
  • Rab guanyl-nucleotide exchange factor activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    HOPS complex 7.579E-7 2 6 2 6292
    vacuolar membrane 3.1973E-4 2 113 2 6292
    vacuolar part 3.6682E-4 2 121 2 6292
    fungal-type vacuole 6.2668E-4 2 158 2 6292
    lytic vacuole 6.2668E-4 2 158 2 6292
    storage vacuole 6.2668E-4 2 158 2 6292
    vacuole 1.0983E-3 2 209 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    vacuole fusion, non-autophagic 1.7735E-5 2 27 2 6292
    vacuole organization 5.2295E-5 2 46 2 6292
    membrane fusion 1.1171E-4 2 67 2 6292
    cellular membrane fusion 1.1171E-4 2 67 2 6292
    membrane organization 9.8542E-4 2 198 2 6292
    cellular membrane organization 9.8542E-4 2 198 2 6292
    vacuolar protein processing 1.5888E-3 2 5 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    Rab guanyl-nucleotide exchange factor activity 7.579E-7 2 6 2 6292
    Ras guanyl-nucleotide exchange factor activity 7.7306E-6 2 18 2 6292
    guanyl-nucleotide exchange factor activity 3.552E-5 2 38 2 6292
    small GTPase regulator activity 8.6451E-5 2 59 2 6292
    GTPase regulator activity 1.7614E-4 2 84 2 6292
    nucleoside-triphosphatase regulator activity 2.256E-4 2 95 2 6292
    enzyme regulator activity 1.0773E-3 2 207 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle