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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 3 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

TRAMP complex 9.6394E-11 3 4 3 6292
nucleolus 3.2839E-3 3 211 2 6292
nuclear part 5.3751E-3 3 1103 3 6292
protein complex 5.8881E-3 3 1137 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

tRNA catabolic process 9.6394E-11 3 4 3 6292
ncRNA polyadenylation 4.8197E-10 3 6 3 6292
ncRNA catabolic process 4.8197E-10 3 6 3 6292
ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process 4.8197E-10 3 6 3 6292
rRNA catabolic process 4.8197E-10 3 6 3 6292
polyadenylation-dependent RNA catabolic process 1.3495E-9 3 8 3 6292
polyadenylation-dependent ncRNA catabolic process 1.3495E-9 3 8 3 6292
ncRNA 3'-end processing 5.3017E-9 3 12 3 6292
RNA polyadenylation 6.2656E-8 3 26 3 6292
RNA 3'-end processing 2.7665E-7 3 42 3 6292
snRNA catabolic process 1.5153E-6 3 5 2 6292
snoRNA catabolic process 1.5153E-6 3 5 2 6292
RNA catabolic process 1.9799E-6 3 80 3 6292
snRNA metabolic process 5.4528E-6 3 9 2 6292
tRNA metabolic process 6.7679E-6 3 120 3 6292
rRNA metabolic process 1.0103E-5 3 137 3 6292
modification-dependent macromolecule catabolic process 1.7394E-5 3 164 3 6292
snoRNA metabolic process 2.3152E-5 3 18 2 6292
ncRNA processing 3.9362E-5 3 215 3 6292
ncRNA metabolic process 6.7384E-5 3 257 3 6292
cellular macromolecule catabolic process 7.39E-5 3 265 3 6292
macromolecule catabolic process 1.0103E-4 3 294 3 6292
RNA processing 2.1865E-4 3 380 3 6292
cellular catabolic process 2.85E-4 3 415 3 6292
mRNA export from nucleus 3.4288E-4 3 68 2 6292
mRNA transport 3.4288E-4 3 68 2 6292
RNA export from nucleus 4.7503E-4 3 80 2 6292
RNA transport 4.8701E-4 3 81 2 6292
nucleic acid transport 4.8701E-4 3 81 2 6292
establishment of RNA localization 4.8701E-4 3 81 2 6292
catabolic process 4.8714E-4 3 496 3 6292
RNA localization 6.2846E-4 3 92 2 6292
nucleobase, nucleoside, nucleotide and nucleic acid transport 6.8432E-4 3 96 2 6292
nuclear export 7.8773E-4 3 103 2 6292
nuclear transport 1.2538E-3 3 130 2 6292
nucleocytoplasmic transport 1.2538E-3 3 130 2 6292
RNA metabolic process 3.4763E-3 3 954 3 6292
DNA topological change 3.8101E-3 3 8 1 6292
mitotic chromosome condensation 5.2364E-3 3 11 1 6292
chromosome condensation 6.1865E-3 3 13 1 6292
gene expression 8.4626E-3 3 1283 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

polynucleotide adenylyltransferase activity 2.2727E-6 3 6 2 6292
adenylyltransferase activity 1.1809E-5 3 13 2 6292
nucleotidyltransferase activity 2.089E-3 3 168 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle