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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 3 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

small nucleolar ribonucleoprotein complex 3.8456E-4 3 72 2 6292
ribonucleoprotein complex 5.4224E-4 3 514 3 6292
nuclear outer membrane 5.4909E-4 3 86 2 6292
nuclear membrane 6.9865E-4 3 97 2 6292
box H/ACA snoRNP complex 9.5344E-4 3 2 1 6292
organelle lumen 1.1495E-3 3 660 3 6292
intracellular organelle lumen 1.1495E-3 3 660 3 6292
membrane-enclosed lumen 1.3717E-3 3 700 3 6292
outer membrane 2.3433E-3 3 178 2 6292
organelle outer membrane 2.3433E-3 3 178 2 6292
nuclear envelope 2.9239E-3 3 199 2 6292
nucleolus 3.2839E-3 3 211 2 6292
non-membrane-bounded organelle 3.5313E-3 3 959 3 6292
intracellular non-membrane-bounded organelle 3.5313E-3 3 959 3 6292
nuclear membrane-endoplasmic reticulum network 3.9627E-3 3 232 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA processing 1.2156E-3 3 128 2 6292
rRNA metabolic process 1.3919E-3 3 137 2 6292
ncRNA 5'-end processing 1.4299E-3 3 3 1 6292
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.4299E-3 3 3 1 6292
rRNA 5'-end processing 1.4299E-3 3 3 1 6292
RNA 5'-end processing 1.4299E-3 3 3 1 6292
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.4299E-3 3 3 1 6292
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.9063E-3 3 4 1 6292
endonucleolytic cleavage involved in rRNA processing 1.9063E-3 3 4 1 6292
rRNA pseudouridine synthesis 1.9063E-3 3 4 1 6292
maturation of 5.8S rRNA 1.9063E-3 3 4 1 6292
cleavage involved in rRNA processing 1.9063E-3 3 4 1 6292
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.9063E-3 3 4 1 6292
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.9063E-3 3 4 1 6292
ncRNA processing 3.4084E-3 3 215 2 6292
pseudouridine synthesis 4.2857E-3 3 9 1 6292
ncRNA metabolic process 4.8516E-3 3 257 2 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 6.1865E-3 3 13 1 6292
gene expression 8.4626E-3 3 1283 3 6292
rRNA modification 8.5592E-3 3 18 1 6292
ribosome biogenesis 8.7172E-3 3 346 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

peptidyltransferase activity 1.4299E-3 3 3 1 6292
transferase activity, transferring amino-acyl groups 2.3825E-3 3 5 1 6292
pseudouridylate synthase activity 2.3825E-3 3 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle