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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

small nuclear ribonucleoprotein complex 8.5667E-11 5 63 5 6292
U4/U6 x U5 tri-snRNP complex 2.7461E-9 5 32 4 6292
ribonucleoprotein complex 3.5735E-6 5 514 5 6292
U5 snRNP 4.5804E-5 5 14 2 6292
nuclear part 1.6432E-4 5 1103 5 6292
macromolecular complex 1.1794E-3 5 1635 5 6292
nucleus 3.5796E-3 5 2041 5 6292
organelle part 6.2578E-3 5 2282 5 6292
intracellular organelle part 6.2578E-3 5 2282 5 6292
U6 snRNP 8.7135E-3 5 11 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear mRNA splicing, via spliceosome 2.8501E-7 5 99 4 6292
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.9684E-7 5 100 4 6292
RNA splicing, via transesterification reactions 3.9031E-7 5 107 4 6292
RNA splicing 9.1091E-7 5 132 4 6292
mRNA processing 1.7841E-6 5 156 4 6292
mRNA metabolic process 6.2193E-6 5 213 4 6292
RNA processing 6.2402E-5 5 380 4 6292
nuclear mRNA 3'-splice site recognition 1.5888E-3 5 2 1 6292
RNA metabolic process 2.3107E-3 5 954 4 6292
mRNA splice site selection 4.7604E-3 5 6 1 6292
gene expression 7.2106E-3 5 1283 4 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

U5 snRNA binding 1.5888E-3 5 2 1 6292
RNA binding 1.8021E-3 5 367 3 6292
snRNA binding 3.9682E-3 5 5 1 6292
binding 7.4489E-3 5 1294 4 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle