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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

box H/ACA snoRNP complex 1.5888E-3 5 2 1 6292
non-membrane-bounded organelle 2.3579E-3 5 959 4 6292
intracellular non-membrane-bounded organelle 2.3579E-3 5 959 4 6292
cytosolic ribosome 2.4722E-3 5 101 2 6292
cytosolic part 3.5891E-3 5 122 2 6292
ribonucleoprotein complex 4.783E-3 5 514 3 6292
ribosomal subunit 7.9403E-3 5 183 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 4.3019E-5 5 346 4 6292
ribonucleoprotein complex biogenesis 5.8585E-5 5 374 4 6292
ribosomal large subunit assembly 4.092E-4 5 41 2 6292
cellular component biogenesis 6.6989E-4 5 694 4 6292
ribosomal subunit assembly 7.3776E-4 5 55 2 6292
ribosome assembly 9.9868E-4 5 64 2 6292
ribosomal large subunit biogenesis 1.0301E-3 5 65 2 6292
organelle assembly 1.1603E-3 5 69 2 6292
translation 1.9341E-3 5 376 3 6292
ribonucleoprotein complex assembly 2.0552E-3 5 92 2 6292
cellular macromolecular complex assembly 7.856E-3 5 182 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 3.5873E-4 5 212 3 6292
7S RNA binding 7.9466E-4 5 1 1 6292
structural molecule activity 1.4293E-3 5 339 3 6292
5S rRNA binding 1.5888E-3 5 2 1 6292
RNA binding 1.8021E-3 5 367 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle