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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

90S preribosome 1.0242E-4 6 17 2 6292
preribosome 4.1945E-4 6 34 2 6292
non-membrane-bounded organelle 4.2731E-4 6 959 5 6292
intracellular non-membrane-bounded organelle 4.2731E-4 6 959 5 6292
cytosolic small ribosomal subunit 5.2472E-4 6 38 2 6292
nucleolus 6.8999E-4 6 211 3 6292
small ribosomal subunit 1.9326E-3 6 73 2 6292
cytosolic ribosome 3.6696E-3 6 101 2 6292
cytosolic part 5.3155E-3 6 122 2 6292
nuclear lumen 6.2906E-3 6 453 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 2.6536E-8 6 346 6 6292
ribonucleoprotein complex biogenesis 4.2465E-8 6 374 6 6292
cellular component biogenesis 1.7662E-6 6 694 6 6292
ribosomal subunit assembly 1.2411E-5 6 55 3 6292
ribosome assembly 1.9646E-5 6 64 3 6292
organelle assembly 2.4661E-5 6 69 3 6292
ribonucleoprotein complex assembly 5.862E-5 6 92 3 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 5.8841E-5 6 13 2 6292
ribosomal small subunit biogenesis 2.4382E-4 6 26 2 6292
cellular macromolecular complex assembly 4.465E-4 6 182 3 6292
ribosomal large subunit assembly 6.1127E-4 6 41 2 6292
regulation of translation 1.1817E-3 6 57 2 6292
cellular macromolecular complex subunit organization 1.2572E-3 6 259 3 6292
maturation of SSU-rRNA 1.2657E-3 6 59 2 6292
posttranscriptional regulation of gene expression 1.3526E-3 6 61 2 6292
ribosomal large subunit biogenesis 1.5348E-3 6 65 2 6292
macromolecular complex assembly 1.5941E-3 6 281 3 6292
regulation of cellular protein metabolic process 1.6787E-3 6 68 2 6292
regulation of protein metabolic process 1.9854E-3 6 74 2 6292
macromolecular complex subunit organization 3.1855E-3 6 357 3 6292
translation 3.6971E-3 6 376 3 6292
cellular component assembly 3.9564E-3 6 385 3 6292
rRNA processing 5.8384E-3 6 128 2 6292
rRNA metabolic process 6.6661E-3 6 137 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA binding 9.041E-5 6 16 2 6292
structural constituent of ribosome 6.9964E-4 6 212 3 6292
7S RNA binding 9.5359E-4 6 1 1 6292
5S rRNA binding 1.9064E-3 6 2 1 6292
structural molecule activity 2.7446E-3 6 339 3 6292
RNA binding 3.4488E-3 6 367 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle