From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.45153343707] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
CCR4-NOT core complex | 2.5415E-3 | 2 | 8 | 1 | 6292 |
cytoplasmic exosome (RNase complex) | 3.811E-3 | 2 | 12 | 1 | 6292 |
CCR4-NOT complex | 4.4455E-3 | 2 | 14 | 1 | 6292 |
nuclear exosome (RNase complex) | 4.7627E-3 | 2 | 15 | 1 | 6292 |
exosome (RNase complex) | 5.0798E-3 | 2 | 16 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
mRNA catabolic process | 1.1854E-4 | 2 | 69 | 2 | 6292 |
RNA catabolic process | 1.5966E-4 | 2 | 80 | 2 | 6292 |
mRNA metabolic process | 1.1408E-3 | 2 | 213 | 2 | 6292 |
cellular macromolecule catabolic process | 1.7674E-3 | 2 | 265 | 2 | 6292 |
macromolecule catabolic process | 2.1762E-3 | 2 | 294 | 2 | 6292 |
polyadenylation-dependent RNA catabolic process | 2.5415E-3 | 2 | 8 | 1 | 6292 |
polyadenylation-dependent ncRNA catabolic process | 2.5415E-3 | 2 | 8 | 1 | 6292 |
nuclear-transcribed mRNA poly(A) tail shortening | 2.5415E-3 | 2 | 8 | 1 | 6292 |
cellular catabolic process | 4.3405E-3 | 2 | 415 | 2 | 6292 |
catabolic process | 6.2027E-3 | 2 | 496 | 2 | 6292 |
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | 8.5646E-3 | 2 | 27 | 1 | 6292 |
mRNA 3'-end processing | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
3'-5'-exoribonuclease activity | 1.2783E-5 | 2 | 23 | 2 | 6292 |
exoribonuclease activity | 1.6421E-5 | 2 | 26 | 2 | 6292 |
exoribonuclease activity, producing 5'-phosphomonoesters | 1.6421E-5 | 2 | 26 | 2 | 6292 |
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 2.8346E-5 | 2 | 34 | 2 | 6292 |
3'-5' exonuclease activity | 3.0063E-5 | 2 | 35 | 2 | 6292 |
exonuclease activity | 5.2295E-5 | 2 | 46 | 2 | 6292 |
ribonuclease activity | 5.5711E-4 | 2 | 149 | 2 | 6292 |
nuclease activity | 9.9543E-4 | 2 | 199 | 2 | 6292 |
hydrolase activity, acting on ester bonds | 2.929E-3 | 2 | 341 | 2 | 6292 |