From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.466851289688] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
fungal-type vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
lytic vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
storage vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
vacuole | 1.0983E-3 | 2 | 209 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
di-, tri-valent inorganic cation transport | 2.5061E-5 | 2 | 32 | 2 | 6292 |
transition metal ion transport | 4.5626E-5 | 2 | 43 | 2 | 6292 |
metal ion transport | 8.3521E-5 | 2 | 58 | 2 | 6292 |
cation transport | 2.256E-4 | 2 | 95 | 2 | 6292 |
ion transport | 3.6076E-4 | 2 | 120 | 2 | 6292 |
cadmium ion transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
bilirubin transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
cobalt ion transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
zinc ion transport | 2.224E-3 | 2 | 7 | 1 | 6292 |
cellular zinc ion homeostasis | 3.811E-3 | 2 | 12 | 1 | 6292 |
zinc ion homeostasis | 3.811E-3 | 2 | 12 | 1 | 6292 |
monocarboxylic acid transport | 4.4455E-3 | 2 | 14 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.