From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.49542550739] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
mitochondrial outer membrane | 2.1151E-4 | 2 | 92 | 2 | 6292 |
outer membrane | 7.9595E-4 | 2 | 178 | 2 | 6292 |
organelle outer membrane | 7.9595E-4 | 2 | 178 | 2 | 6292 |
mitochondrial membrane | 1.7808E-3 | 2 | 266 | 2 | 6292 |
mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
integral to mitochondrial outer membrane | 4.1283E-3 | 2 | 13 | 1 | 6292 |
intrinsic to mitochondrial outer membrane | 4.1283E-3 | 2 | 13 | 1 | 6292 |
integral to mitochondrial membrane | 4.4455E-3 | 2 | 14 | 1 | 6292 |
mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
phosphatidic acid biosynthetic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
phosphatidic acid metabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
lipid biosynthetic process | 4.2367E-4 | 2 | 130 | 2 | 6292 |
lipid metabolic process | 1.4491E-3 | 2 | 240 | 2 | 6292 |
electron transport | 2.859E-3 | 2 | 9 | 1 | 6292 |
phytosteroid metabolic process | 8.248E-3 | 2 | 26 | 1 | 6292 |
phytosteroid biosynthetic process | 8.248E-3 | 2 | 26 | 1 | 6292 |
ergosterol metabolic process | 8.248E-3 | 2 | 26 | 1 | 6292 |
ergosterol biosynthetic process | 8.248E-3 | 2 | 26 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
acylglycerone-phosphate reductase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
cytochrome-b5 reductase activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor | 1.5888E-3 | 2 | 5 | 1 | 6292 |
oxidoreductase activity | 1.9877E-3 | 2 | 281 | 2 | 6292 |
oxidoreductase activity, acting on NADH or NADPH | 6.6645E-3 | 2 | 21 | 1 | 6292 |