| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.508138627546] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| FOB1 |
|
|
|
| NSR1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nucleolus | 1.1194E-3 | 2 | 211 | 2 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| extrachromosomal circular DNA accumulation involved in cell aging | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| negative regulation of DNA replication | 2.859E-3 | 2 | 9 | 1 | 6292 |
| progressive alteration of chromatin involved in cell aging | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| ribosomal small subunit assembly | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| regulation of DNA replication | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| chromatin silencing at rDNA | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| negative regulation of DNA metabolic process | 6.6645E-3 | 2 | 21 | 1 | 6292 |
| chromosome organization | 7.7677E-3 | 2 | 555 | 2 | 6292 |
| ribosomal small subunit biogenesis | 8.248E-3 | 2 | 26 | 1 | 6292 |
| DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
| regulation of DNA metabolic process | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| DNA binding | 1.6492E-3 | 2 | 256 | 2 | 6292 |
| rDNA binding | 2.224E-3 | 2 | 7 | 1 | 6292 |
| single-stranded DNA binding | 5.0798E-3 | 2 | 16 | 1 | 6292 |