| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.515756161574] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| ARF1 |
|
|
|
| YOS1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| cytoplasmic vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
| membrane-bounded vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
| cytoplasmic membrane-bounded vesicle | 2.8654E-4 | 2 | 107 | 2 | 6292 |
| vesicle | 3.0291E-4 | 2 | 110 | 2 | 6292 |
| Golgi apparatus part | 3.5475E-4 | 2 | 119 | 2 | 6292 |
| Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
| integral to Golgi membrane | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| intrinsic to Golgi membrane | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| ER to Golgi transport vesicle | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ER to Golgi vesicle-mediated transport | 1.7194E-4 | 2 | 83 | 2 | 6292 |
| Golgi vesicle transport | 7.0879E-4 | 2 | 168 | 2 | 6292 |
| vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
| intra-Golgi vesicle-mediated transport | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
| establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
| Golgi to plasma membrane transport | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |