From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.552696224255] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
cellular bud neck | 4.1715E-4 | 2 | 129 | 2 | 6292 |
cellular bud | 6.9196E-4 | 2 | 166 | 2 | 6292 |
site of polarized growth | 7.0879E-4 | 2 | 168 | 2 | 6292 |
cytoskeletal part | 1.0156E-3 | 2 | 201 | 2 | 6292 |
cytoskeleton | 1.1732E-3 | 2 | 216 | 2 | 6292 |
cellular bud neck contractile ring | 5.7138E-3 | 2 | 18 | 1 | 6292 |
actomyosin contractile ring | 5.7138E-3 | 2 | 18 | 1 | 6292 |
contractile ring | 5.7138E-3 | 2 | 18 | 1 | 6292 |
cell division site | 8.5646E-3 | 2 | 27 | 1 | 6292 |
cell division site part | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
protein amino acid phosphorylation | 2.6542E-4 | 2 | 103 | 2 | 6292 |
phosphorylation | 8.0494E-4 | 2 | 179 | 2 | 6292 |
phosphorus metabolic process | 1.3191E-3 | 2 | 229 | 2 | 6292 |
phosphate metabolic process | 1.3191E-3 | 2 | 229 | 2 | 6292 |
septin checkpoint | 1.9064E-3 | 2 | 6 | 1 | 6292 |
regulation of cytokinesis | 1.9064E-3 | 2 | 6 | 1 | 6292 |
cytokinesis checkpoint | 1.9064E-3 | 2 | 6 | 1 | 6292 |
regulation of cell division | 2.224E-3 | 2 | 7 | 1 | 6292 |
post-translational protein modification | 3.2108E-3 | 2 | 357 | 2 | 6292 |
protein modification process | 6.278E-3 | 2 | 499 | 2 | 6292 |
macromolecule modification | 8.1649E-3 | 2 | 569 | 2 | 6292 |
axial cellular bud site selection | 9.1975E-3 | 2 | 29 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
protein kinase activity | 6.1087E-4 | 2 | 156 | 2 | 6292 |
phosphotransferase activity, alcohol group as acceptor | 9.8542E-4 | 2 | 198 | 2 | 6292 |
kinase activity | 1.2395E-3 | 2 | 222 | 2 | 6292 |
transferase activity, transferring phosphorus-containing groups | 4.4459E-3 | 2 | 420 | 2 | 6292 |