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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.552696224255]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
CDC5
  • nucleus
  • cellular bud neck
  • spindle pole
    		•
  • DNA-dependent DNA replication
  • protein amino acid phosphorylation
    		•
  • protein kinase activity
    		•
    ELM1
  • cellular bud neck contractile ring
    		•
  • axial cellular bud site selection
  • cell morphogenesis
  • response to drug
  • response to osmotic stress
  • pseudohyphal growth
  • cytokinesis
  • glucose metabolic process
  • protein amino acid phosphorylation
  • budding cell bud growth
  • septin checkpoint
    		•
  • protein serine/threonine kinase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    cellular bud neck 4.1715E-4 2 129 2 6292
    cellular bud 6.9196E-4 2 166 2 6292
    site of polarized growth 7.0879E-4 2 168 2 6292
    cytoskeletal part 1.0156E-3 2 201 2 6292
    cytoskeleton 1.1732E-3 2 216 2 6292
    cellular bud neck contractile ring 5.7138E-3 2 18 1 6292
    actomyosin contractile ring 5.7138E-3 2 18 1 6292
    contractile ring 5.7138E-3 2 18 1 6292
    cell division site 8.5646E-3 2 27 1 6292
    cell division site part 8.5646E-3 2 27 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    protein amino acid phosphorylation 2.6542E-4 2 103 2 6292
    phosphorylation 8.0494E-4 2 179 2 6292
    phosphorus metabolic process 1.3191E-3 2 229 2 6292
    phosphate metabolic process 1.3191E-3 2 229 2 6292
    septin checkpoint 1.9064E-3 2 6 1 6292
    regulation of cytokinesis 1.9064E-3 2 6 1 6292
    cytokinesis checkpoint 1.9064E-3 2 6 1 6292
    regulation of cell division 2.224E-3 2 7 1 6292
    post-translational protein modification 3.2108E-3 2 357 2 6292
    protein modification process 6.278E-3 2 499 2 6292
    macromolecule modification 8.1649E-3 2 569 2 6292
    axial cellular bud site selection 9.1975E-3 2 29 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    protein kinase activity 6.1087E-4 2 156 2 6292
    phosphotransferase activity, alcohol group as acceptor 9.8542E-4 2 198 2 6292
    kinase activity 1.2395E-3 2 222 2 6292
    transferase activity, transferring phosphorus-containing groups 4.4459E-3 2 420 2 6292
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    Created and Maintained by: Michael Riffle