| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.568231489667] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| RPB11 |
|
|
|
| RPC82 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| RNA polymerase complex | 2.3495E-5 | 2 | 31 | 2 | 6292 |
| nuclear DNA-directed RNA polymerase complex | 2.3495E-5 | 2 | 31 | 2 | 6292 |
| DNA-directed RNA polymerase complex | 2.3495E-5 | 2 | 31 | 2 | 6292 |
| nucleoplasm part | 1.5102E-3 | 2 | 245 | 2 | 6292 |
| nucleoplasm | 1.7541E-3 | 2 | 264 | 2 | 6292 |
| DNA-directed RNA polymerase II, core complex | 3.811E-3 | 2 | 12 | 1 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
| DNA-directed RNA polymerase III complex | 5.3968E-3 | 2 | 17 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transcription, DNA-dependent | 6.3792E-3 | 2 | 503 | 2 | 6292 |
| RNA biosynthetic process | 6.5067E-3 | 2 | 508 | 2 | 6292 |
| transcription | 7.6839E-3 | 2 | 552 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| RNA polymerase activity | 2.8346E-5 | 2 | 34 | 2 | 6292 |
| DNA-directed RNA polymerase activity | 2.8346E-5 | 2 | 34 | 2 | 6292 |
| nucleotidyltransferase activity | 7.0879E-4 | 2 | 168 | 2 | 6292 |
| transferase activity, transferring phosphorus-containing groups | 4.4459E-3 | 2 | 420 | 2 | 6292 |