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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.587276820178]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
LCP5
  • nuclear outer membrane
  • small nuclear ribonucleoprotein complex
  • small nucleolar ribonucleoprotein complex
    		•
  • rRNA modification
  • ribosome biogenesis
    		•
  • RNA binding
    		•
    PWP2
  • cytoplasm
  • nuclear outer membrane
  • 90S preribosome
  • small nucleolar ribonucleoprotein complex
    		•
  • maturation of SSU-rRNA
  • cytokinesis
  • ribosome biogenesis
    		•
  • snoRNA binding
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    small nucleolar ribonucleoprotein complex 1.2915E-4 2 72 2 6292
    nuclear outer membrane 1.8468E-4 2 86 2 6292
    nuclear membrane 2.3525E-4 2 97 2 6292
    outer membrane 7.9595E-4 2 178 2 6292
    organelle outer membrane 7.9595E-4 2 178 2 6292
    nuclear envelope 9.9543E-4 2 199 2 6292
    nuclear membrane-endoplasmic reticulum network 1.3539E-3 2 232 2 6292
    endomembrane system 3.9918E-3 2 398 2 6292
    90S preribosome 5.3968E-3 2 17 1 6292
    envelope 6.43E-3 2 505 2 6292
    organelle envelope 6.43E-3 2 505 2 6292
    ribonucleoprotein complex 6.6615E-3 2 514 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    rRNA processing 4.1068E-4 2 128 2 6292
    rRNA metabolic process 4.7071E-4 2 137 2 6292
    ncRNA processing 1.1624E-3 2 215 2 6292
    ncRNA metabolic process 1.6621E-3 2 257 2 6292
    ribosome biogenesis 3.0157E-3 2 346 2 6292
    ribonucleoprotein complex biogenesis 3.5243E-3 2 374 2 6292
    RNA processing 3.6384E-3 2 380 2 6292
    rRNA modification 5.7138E-3 2 18 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    RNA binding 3.3934E-3 2 367 2 6292
    snoRNA binding 9.8303E-3 2 31 1 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle