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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.600582930977]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

vacuole 1.0983E-3 2 209 2 6292
vacuolar proton-transporting V-type ATPase, V0 domain 2.224E-3 2 7 1 6292
proton-transporting V-type ATPase, V0 domain 2.224E-3 2 7 1 6292
vacuolar proton-transporting V-type ATPase complex 4.7627E-3 2 15 1 6292
proton-transporting V-type ATPase complex 4.7627E-3 2 15 1 6292
proton-transporting two-sector ATPase complex, proton-transporting domain 6.0308E-3 2 19 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

sulfate assimilation 3.1764E-3 2 10 1 6292
mannoprotein biosynthetic process 4.1283E-3 2 13 1 6292
mannoprotein metabolic process 4.1283E-3 2 13 1 6292
cell wall glycoprotein biosynthetic process 4.1283E-3 2 13 1 6292
cell wall mannoprotein biosynthetic process 4.1283E-3 2 13 1 6292
vacuole inheritance 4.7627E-3 2 15 1 6292
cell wall macromolecule biosynthetic process 6.9813E-3 2 22 1 6292
cellular component macromolecule biosynthetic process 6.9813E-3 2 22 1 6292
cellular cell wall macromolecule metabolic process 7.2981E-3 2 23 1 6292
cell wall macromolecule metabolic process 7.6148E-3 2 24 1 6292
pH reduction 7.6148E-3 2 24 1 6292
intracellular pH reduction 7.6148E-3 2 24 1 6292
vacuolar acidification 7.6148E-3 2 24 1 6292
regulation of intracellular pH 7.9314E-3 2 25 1 6292
regulation of cellular pH 7.9314E-3 2 25 1 6292
retrograde vesicle-mediated transport, Golgi to ER 8.248E-3 2 26 1 6292
vacuole fusion, non-autophagic 8.5646E-3 2 27 1 6292
regulation of pH 9.1975E-3 2 29 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

thiol-disulfide exchange intermediate activity 2.5415E-3 2 8 1 6292
ATPase activity, coupled to transmembrane movement of ions 9.1975E-3 2 29 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle