| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.601622594633] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| STB2 |
|
|
|
| SUM1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| histone deacetylase complex | 1.2783E-5 | 2 | 23 | 2 | 6292 |
| chromatin remodeling complex | 2.4511E-4 | 2 | 99 | 2 | 6292 |
| Sin3 complex | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| nucleoplasm part | 1.5102E-3 | 2 | 245 | 2 | 6292 |
| Sin3-type complex | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| nucleoplasm | 1.7541E-3 | 2 | 264 | 2 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| chromosome organization | 7.7677E-3 | 2 | 555 | 2 | 6292 |
| histone deacetylation | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| regulation of nuclear division | 9.1975E-3 | 2 | 29 | 1 | 6292 |
| regulation of mitosis | 9.1975E-3 | 2 | 29 | 1 | 6292 |
| protein amino acid deacetylation | 9.1975E-3 | 2 | 29 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transcription repressor activity | 4.7798E-5 | 2 | 44 | 2 | 6292 |
| transcription regulator activity | 2.8947E-3 | 2 | 339 | 2 | 6292 |