| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.601651958795] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| internal side of plasma membrane | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| extrinsic to internal side of plasma membrane | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
| TORC1 complex | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| TORC2 complex | 2.859E-3 | 2 | 9 | 1 | 6292 |
| extrinsic to plasma membrane | 5.3968E-3 | 2 | 17 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| actin cytoskeleton organization | 3.1973E-4 | 2 | 113 | 2 | 6292 |
| actin filament-based process | 3.4287E-4 | 2 | 117 | 2 | 6292 |
| cytoskeleton organization | 1.3422E-3 | 2 | 231 | 2 | 6292 |
| actin cytoskeleton reorganization | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| actin filament reorganization involved in cell cycle | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| establishment or maintenance of actin cytoskeleton polarity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| establishment or maintenance of cytoskeleton polarity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| regulation of cell growth | 3.811E-3 | 2 | 12 | 1 | 6292 |
| regulation of growth | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| Rho protein signal transduction | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| G1 phase of mitotic cell cycle | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| G1 phase | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| lipid kinase activity | 2.2737E-6 | 2 | 10 | 2 | 6292 |
| inositol or phosphatidylinositol kinase activity | 2.779E-6 | 2 | 11 | 2 | 6292 |
| 1-phosphatidylinositol-4-phosphate 5-kinase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| phosphatidylinositol phosphate kinase activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| phosphotransferase activity, alcohol group as acceptor | 9.8542E-4 | 2 | 198 | 2 | 6292 |
| kinase activity | 1.2395E-3 | 2 | 222 | 2 | 6292 |
| 1-phosphatidylinositol-3-kinase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| phosphoinositide 3-kinase activity | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| transferase activity, transferring phosphorus-containing groups | 4.4459E-3 | 2 | 420 | 2 | 6292 |