| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.602483872942] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| ILV1 |
|
|
|
| ILV3 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| branched chain family amino acid biosynthetic process | 5.3053E-6 | 2 | 15 | 2 | 6292 |
| branched chain family amino acid metabolic process | 7.7306E-6 | 2 | 18 | 2 | 6292 |
| cellular amino acid biosynthetic process | 3.2544E-4 | 2 | 114 | 2 | 6292 |
| amine biosynthetic process | 3.7294E-4 | 2 | 122 | 2 | 6292 |
| organic acid biosynthetic process | 4.846E-4 | 2 | 139 | 2 | 6292 |
| carboxylic acid biosynthetic process | 4.846E-4 | 2 | 139 | 2 | 6292 |
| cellular amino acid metabolic process | 9.9543E-4 | 2 | 199 | 2 | 6292 |
| cellular amine metabolic process | 1.2395E-3 | 2 | 222 | 2 | 6292 |
| amine metabolic process | 1.4856E-3 | 2 | 243 | 2 | 6292 |
| cellular amino acid and derivative metabolic process | 1.4856E-3 | 2 | 243 | 2 | 6292 |
| cellular nitrogen compound biosynthetic process | 1.5351E-3 | 2 | 247 | 2 | 6292 |
| small molecule biosynthetic process | 2.42E-3 | 2 | 310 | 2 | 6292 |
| organic acid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
| oxoacid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
| carboxylic acid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
| cellular ketone metabolic process | 3.0157E-3 | 2 | 346 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| lyase activity | 1.9342E-4 | 2 | 88 | 2 | 6292 |
| dihydroxy-acid dehydratase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| L-threonine ammonia-lyase activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| ammonia-lyase activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| carbon-nitrogen lyase activity | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| hydro-lyase activity | 8.5646E-3 | 2 | 27 | 1 | 6292 |