| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.615342079341] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| GGA1 |
|
|
|
| VPS52 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| Golgi apparatus part | 3.5475E-4 | 2 | 119 | 2 | 6292 |
| Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
| GARP complex | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| trans-Golgi network | 4.1283E-3 | 2 | 13 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| Golgi to vacuole transport | 1.3945E-5 | 2 | 24 | 2 | 6292 |
| endosome transport | 6.6999E-5 | 2 | 52 | 2 | 6292 |
| post-Golgi vesicle-mediated transport | 1.151E-4 | 2 | 68 | 2 | 6292 |
| vacuolar transport | 3.312E-4 | 2 | 115 | 2 | 6292 |
| Golgi vesicle transport | 7.0879E-4 | 2 | 168 | 2 | 6292 |
| late endosome to vacuole transport via multivesicular body sorting pathway | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| endosome transport via multivesicular body sorting pathway | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
| Golgi to endosome transport | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| retrograde transport, endosome to Golgi | 6.0308E-3 | 2 | 19 | 1 | 6292 |
| late endosome to vacuole transport | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
| establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ubiquitin binding | 2.224E-3 | 2 | 7 | 1 | 6292 |
| small conjugating protein binding | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| protein binding | 9.4468E-3 | 2 | 612 | 2 | 6292 |