| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.621118009375] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
| chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| postreplication repair | 7.7306E-6 | 2 | 18 | 2 | 6292 |
| DNA repair | 9.2646E-4 | 2 | 192 | 2 | 6292 |
| response to DNA damage stimulus | 1.4011E-3 | 2 | 236 | 2 | 6292 |
| DNA recombinase assembly | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| meiotic DNA recombinase assembly | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| cellular response to stress | 2.1173E-3 | 2 | 290 | 2 | 6292 |
| double-strand break repair via synthesis-dependent strand annealing | 2.224E-3 | 2 | 7 | 1 | 6292 |
| double-strand break repair via break-induced replication | 2.859E-3 | 2 | 9 | 1 | 6292 |
| double-strand break repair via single-strand annealing | 2.859E-3 | 2 | 9 | 1 | 6292 |
| cellular response to stimulus | 3.6193E-3 | 2 | 379 | 2 | 6292 |
| telomere maintenance via recombination | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
| double-strand break repair via homologous recombination | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| recombinational repair | 8.248E-3 | 2 | 26 | 1 | 6292 |
| DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| single-stranded DNA binding | 6.0632E-6 | 2 | 16 | 2 | 6292 |
| structure-specific DNA binding | 4.7798E-5 | 2 | 44 | 2 | 6292 |
| DNA strand annealing activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| recombinase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| DNA binding | 1.6492E-3 | 2 | 256 | 2 | 6292 |
| double-stranded DNA binding | 7.2981E-3 | 2 | 23 | 1 | 6292 |