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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.646175698886]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

histone deacetylase complex 1.2783E-5 2 23 2 6292
chromatin remodeling complex 2.4511E-4 2 99 2 6292
Sin3 complex 1.2712E-3 2 4 1 6292
nucleoplasm part 1.5102E-3 2 245 2 6292
Sin3-type complex 1.5888E-3 2 5 1 6292
nucleoplasm 1.7541E-3 2 264 2 6292
nuclear lumen 5.1728E-3 2 453 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

protein amino acid deacetylation 2.0514E-5 2 29 2 6292
chromatin organization 1.036E-3 2 203 2 6292
post-translational protein modification 3.2108E-3 2 357 2 6292
protein modification process 6.278E-3 2 499 2 6292
chromosome organization 7.7677E-3 2 555 2 6292
macromolecule modification 8.1649E-3 2 569 2 6292
histone deacetylation 8.5646E-3 2 27 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle