| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.661063091214] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| preribosome, large subunit precursor | 2.859E-3 | 2 | 9 | 1 | 6292 |
| U5 snRNP | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| ribonucleoprotein complex | 6.6615E-3 | 2 | 514 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ribonucleoprotein complex assembly | 2.1151E-4 | 2 | 92 | 2 | 6292 |
| auxin biosynthetic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| auxin metabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| regulation of hormone levels | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| hormone metabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| hormone biosynthetic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| cellular macromolecular complex assembly | 8.3223E-4 | 2 | 182 | 2 | 6292 |
| cellular macromolecular complex subunit organization | 1.6882E-3 | 2 | 259 | 2 | 6292 |
| macromolecular complex assembly | 1.9877E-3 | 2 | 281 | 2 | 6292 |
| spliceosomal conformational changes to generate catalytic conformation | 2.859E-3 | 2 | 9 | 1 | 6292 |
| macromolecular complex subunit organization | 3.2108E-3 | 2 | 357 | 2 | 6292 |
| ribonucleoprotein complex biogenesis | 3.5243E-3 | 2 | 374 | 2 | 6292 |
| cellular component assembly | 3.7349E-3 | 2 | 385 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ATP-dependent RNA helicase activity | 1.9099E-5 | 2 | 28 | 2 | 6292 |
| RNA-dependent ATPase activity | 2.0514E-5 | 2 | 29 | 2 | 6292 |
| RNA helicase activity | 4.3504E-5 | 2 | 42 | 2 | 6292 |
| ATP-dependent helicase activity | 5.6994E-5 | 2 | 48 | 2 | 6292 |
| purine NTP-dependent helicase activity | 5.6994E-5 | 2 | 48 | 2 | 6292 |
| helicase activity | 1.7194E-4 | 2 | 83 | 2 | 6292 |
| ATPase activity, coupled | 5.5711E-4 | 2 | 149 | 2 | 6292 |
| ATPase activity | 1.1194E-3 | 2 | 211 | 2 | 6292 |
| nucleoside-triphosphatase activity | 2.7262E-3 | 2 | 329 | 2 | 6292 |
| hydrolase activity, acting on acid anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
| pyrophosphatase activity | 3.1391E-3 | 2 | 353 | 2 | 6292 |