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Protein Overview: VID27

General Information:
Name(s) found: VID27 / YNL212W [SGD]
Description(s) found:
Found 24 descriptions.
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  • Cytoplasmic protein of unknown function; possibly involved in vacuolar protein degradation; not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase); null mutants exhibit normal growth [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 782 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILKKFMES GNKPELITIP SGQFNLLRSK NSPKAALECI YNNATLSVRK IGKFDYELAV  60
   61 YRVEDDSEGG TGDEAENFED DTISVLSTQS KKKEEEWSVE ISDKIMFHKT WDKQGNVALV 120
  121 WENLRGDEQD EKVQFVVAAD VSFSDVEQFI QTVYRCQFEV RNKKSSLTAS ADDLKEIEHR 180
  181 STRLFVQDDD DELDSSSDDF QDAKDTSFEH EKESEILERT PSPLKKVPEG EYCCLVMSSL 240
  241 YMYDPIQEKF ILQEPVVKVA IIDTGKYEFW LAIEGKDNRL GTQVAPNINP TFELATDAFL 300
  301 FNYTLQNITL SYMLKFKDLD KCIQFRFAWV KCLWMTLNKE TWTDVPEKEK DYILDSSSVP 360
  361 LEKQFDDILH IDDRSNEERD KESSESENDS EDEDDENDHS KRIISSEAFE EPRRATSKGN 420
  421 SSLTVAFRNN RSYVTRDNRI GVFKTDDEDD SLEFVAAIKN ISNLGGKSID PHKPMLYMED 480
  481 RNLILTDGEN ENKLYKMDIE RGKVIEEWST GDKNVVQYGP TKKFDQMTPE QTIVGVSQKG 540
  541 VFKIDPRING KNKIAVDESK DYVGKYNFSS IGTTESGYIA IGSEKGDIKL YDRLGIRAKT 600
  601 AIPSLGQAIK FITTSADGKW LLATCESTLL LMDLKIKDGK NAGNIGFLKS FPASENVKTY 660
  661 VLKIRPEHSA SILTYTKKPI RFTKAYFNTG IGQQEQTIVT STGPYAISWS LKGILNQDGS 720
  721 NNYPYRIRRY NADVVADNFE FGSDKKVIVA LKDDVSLSKV KSFKQPSKGV LMPSASLQDF 780
  781 YG

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Gavin AC, et al. (2006) CCT2 CCT5 CCT7 PLP2 VID27

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data VID27 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..364] deduced N/A No confident structure predictions are available.
    2 View Details [365..682] ORFEUS 14.68 beta1-subunit of the signal-transducing G protein heterotrimer
    3 View Details [683..782] ORFEUS 10.5 Quinohemoprotein amine dehydrogenase B chain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.365473879287901 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle