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Protein Overview: NMD2

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #30 Asynchronous Prep6-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #11 Mitotic Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)

Yeast Two-Hybrid Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data NMD2 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..272] Pfam 28.070581 MIF4G domain No confident structure predictions are available.
2 View Details [273..336] deduced N/A Confident ab initio structure predictions are available.
3 View Details [337..589] ORFEUS 13.8 CBP80, 80KDa nuclear cap-binding protein
4 View Details [590..944] PSI-BLAST 48.522879 Heavy meromyosin subfragment
5 View Details [945..1089] PSI-BLAST 17.221849 Tropomyosin

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2 No functions predicted.
3
Term Confidence Notes
  • RNA binding
  • 4.05046860305563 bayes_pls_golite062009
  • mRNA binding
  • 2.35042158577052 bayes_pls_golite062009
  • binding
  • 1.72811847650743 bayes_pls_golite062009
  • protein binding
  • 1.3800948965226 bayes_pls_golite062009
  • nucleic acid binding
  • 0.916304573557693 bayes_pls_golite062009
  • structural molecule activity
  • 0.867897004862886 bayes_pls_golite062009
  • RNA cap binding
  • 0.357520253345298 bayes_pls_golite062009
  • hydrolase activity
  • 0.33256091835104 bayes_pls_golite062009
  • transcription regulator activity
  • 0.0462205765670426 bayes_pls_golite062009
    4
    Term Confidence Notes
  • RNA binding
  • 4.20683443264388 bayes_pls_golite062009
  • mRNA binding
  • 2.49094746544717 bayes_pls_golite062009
  • binding
  • 1.83406697369076 bayes_pls_golite062009
  • protein binding
  • 1.50566694420704 bayes_pls_golite062009
  • nucleic acid binding
  • 0.967597910409065 bayes_pls_golite062009
  • structural molecule activity
  • 0.868289396026548 bayes_pls_golite062009
  • RNA cap binding
  • 0.66277586901495 bayes_pls_golite062009
  • hydrolase activity
  • 0.29428275639657 bayes_pls_golite062009
  • transcription regulator activity
  • 0.022274123463527 bayes_pls_golite062009
    5 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle