| Protein: | SRMB_ECOLI |
| Organism: | Escherichia coli |
| Length: | 444 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRMB_ECOLI.
| Description | E-value | Query Range |
Subject Range |
|
|
381.0 | [0..5] | [438..13] |
|
|
381.0 | [0..5] | [438..13] |
|
|
378.0 | [0..5] | [443..2] |
|
|
375.0 | [0..5] | [431..2] |
|
|
375.0 | [0..5] | [443..2] |
|
|
375.0 | [0..5] | [438..13] |
|
|
375.0 | [0..5] | [438..13] |
|
|
372.0 | [0..5] | [442..2] |
|
|
372.0 | [0..5] | [444..2] |
|
|
372.0 | [0..5] | [433..2] |
|
Region A: Residues: [1-69] |
1 11 21 31 41 51
| | | | | |
1 MTVTTFSELE LDESLLEALQ DKGFTRPTAI QAAAIPPALD GRDVLGSAPT GTGKTAAYLL 60
61 PALQHLLDF
|
| Detection Method: |  |
| Confidence: | 88.154902 |
| Match: | 2hxyA |
| Description: | No description for 2hxyA was found. |
|
Region A: Residues: [70-444] |
1 11 21 31 41 51
| | | | | |
1 PRKKSGPPRI LILTPTRELA MQVSDHAREL AKHTHLDIAT ITGGVAYMNH AEVFSENQDI 60
61 VVATTGRLLQ YIKEENFDCR AVETLILDEA DRMLDMGFAQ DIEHIAGETR WRKQTLLFSA 120
121 TLEGDAIQDF AERLLEDPVE VSANPSTRER KKIHQWYYRA DDLEHKTALL VHLLKQPEAT 180
181 RSIVFVRKRE RVHELANWLR EAGINNCYLE GEMVQGKRNE AIKRLTEGRV NVLVATDVAA 240
241 RGIDIPDVSH VFNFDMPRSG DTYLHRIGRT ARAGRKGTAI SLVEAHDHLL LGKVGRYIEE 300
301 PIKARVIDEL RPKTRAPSEK QTGKPSKKVL AKRAEKKKAK EKEKPRVKKR HRDTKNIGKR 360
361 RKPSGTGVPP QTTEE
|
| Detection Method: | |
| Confidence: | 24.522879 |
| Match: | 1d9xA |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| translation initiation factor activity | 7.79457008386475 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 4.98637553020315 | bayes_pls_golite062009 |
| translation regulator activity | 4.94658029227343 | bayes_pls_golite062009 |
| motor activity | 2.79327761685782 | bayes_pls_golite062009 |
| microtubule motor activity | 2.74365461017633 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| hydrolase activity | 2.55157966585974 | bayes_pls_golite062009 |
| nucleic acid binding | 2.51683451033161 | bayes_pls_golite062009 |
| RNA cap binding | 2.17871969124431 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.13284212711072 | bayes_pls_golite062009 |
| DNA binding | 1.94055378599526 | bayes_pls_golite062009 |
| transcription regulator activity | 1.83584389083042 | bayes_pls_golite062009 |
| 1.75135117904448 | bayes_pls_golite062009 | |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 1.54436515966471 | bayes_pls_golite062009 |
| DNA clamp loader activity | 1.51134988628578 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.47858140861683 | bayes_pls_golite062009 |
| RNA helicase activity | 1.42791449104435 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.40488517180956 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 1.39335733374328 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 1.36724390116598 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.2155186842031 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| tubulin binding | 0.979946830272106 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.971476020912368 | bayes_pls_golite062009 |
| transcription factor activity | 0.959949409533517 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.928091843881235 | bayes_pls_golite062009 |
| microtubule binding | 0.907162506177187 | bayes_pls_golite062009 |
| actin binding | 0.883285269827407 | bayes_pls_golite062009 |
| structural molecule activity | 0.86514677273731 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.782430219754236 | bayes_pls_golite062009 |
| DNA helicase activity | 0.72881469450553 | bayes_pls_golite062009 |
| RNA binding | 0.715902454627085 | bayes_pls_golite062009 |
| ribonuclease activity | 0.712344060953362 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.6071273686445 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.5886142102548 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.569910969126728 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.568840867400671 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.568779924702229 | bayes_pls_golite062009 |
| nucleotide binding | 0.564275755355315 | bayes_pls_golite062009 |
| ATP binding | 0.1860481660648 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.152859582615242 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.138615225841109 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
| microfilament motor activity | 0.0313060889304495 | bayes_pls_golite062009 |
