| Protein: | lub1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 713 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lub1.
| Description | E-value | Query Range |
Subject Range |
|
|
557.0 | [0..7] | [603..1165] |
|
|
545.0 | [0..3] | [581..895] |
|
|
541.0 | [0..1] | [535..597] |
|
|
534.0 | [0..2] | [573..935] |
|
|
534.0 | [0..7] | [607..1037] |
|
|
524.0 | [0..7] | [571..641] |
|
|
523.0 | [0..2] | [548..983] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MTSYELSREL GGHKQDVRGV CSISNELIGS ASRDGTYSVW EQINGEWTPH FYENHEGFVN 60
61 CVCYVPAIDK NSRGGQDKCG ILQE
|
| Detection Method: |  |
| Confidence: | 64.522879 |
| Match: | 2ovpB |
| Description: | No description for 2ovpB was found. |
|
Region A: Residues: [85-213] |
1 11 21 31 41 51
| | | | | |
1 VGTNSPSYYL FGHESNICSA SALNSETIIT GSWDSTARVW ALGQCKYVLK GHQSSVWAVL 60
61 ALGEDIFITG SADKLIKIWN GEKLVKSILA HNDCVRSLCQ IPGGFASCSN DGVIKLWTSD 120
121 GEFLYELHG
|
| Detection Method: | |
| Confidence: | 4.154902 |
| Match: | 1l0qA |
| Description: | Surface layer protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [214-544] |
1 11 21 31 41 51
| | | | | |
1 HTSFVYSLTY IHNQQLIASC GEDRTIRIWK GKECLQCITL PTTSVWSVSS LPNGDLVCGS 60
61 SDGFVRIFTV DKVRVAPTEV LKNFEERVSQ FAISSQEVGD IKKGSLPGLE ILSKPGKADG 120
121 DVVMVRVNND VEAYQWSQKE NEWKKIGQVV DAVGNNRKQL FEGKEYDYVF DVDVADGQAP 180
181 LKLPYNATEN PYQAANRFLE LNQLPLSYTD EVVKFIEKNT QGHSLESKKE PNLESQSSNK 240
241 IKTTIFPVSQ LLFSNANVPA MCQRLRSLNN TKSNPLPAKS IDSLERALSS KKITDTEKNE 300
301 LLETCLSILD SWSLAERFPA LDALRLLAIN S
|
| Detection Method: | |
| Confidence: | 11.69897 |
| Match: | 1s4uX |
| Description: | Crystal Structure analysis of the beta-propeller protein Ski8p |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ubiquitin-protein ligase activity | 3.10232773079579 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 2.89805111479917 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| protein binding | 2.26925404328312 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 2.01595241503145 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.900963766598159 | bayes_pls_golite062009 |
| nucleic acid binding | 0.879332537553732 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.734230328744066 | bayes_pls_golite062009 |
| actin binding | 0.708446291495757 | bayes_pls_golite062009 |
| histone binding | 0.685319917508843 | bayes_pls_golite062009 |
| transcription regulator activity | 0.579815310385678 | bayes_pls_golite062009 |
| histone methyltransferase activity | 0.311523647180993 | bayes_pls_golite062009 |
| DNA binding | 0.296423033247139 | bayes_pls_golite062009 |
| protein kinase activity | 0.229242350006544 | bayes_pls_golite062009 |
| chromatin binding | 0.145491963066342 | bayes_pls_golite062009 |
| phospholipase A2 activator activity | 0.0696962213283392 | bayes_pls_golite062009 |
|
Region A: Residues: [545-713] |
1 11 21 31 41 51
| | | | | |
1 SSDLAPIFLE VFSRVVKSVP SSGNFESINV MLALRGLSNV VPNITDAEGV SKLMDCLTST 60
61 VPQASSAKDF KIAFATLAMN LSILLIQLNL ENTGIELLSI LFSFLDDPSP DNEAFYRALM 120
121 ALGTLCTVPD IALAASQIYH AQSIVHGIAE RFSQEMRFVD AEKQILSLF
|
| Detection Method: | |
| Confidence: | 6.585027 |
| Match: | PF08324.2 |
| Description: | No description for PF08324.2 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
