| Protein: | RDH54 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 924 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RDH54.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..924] | [1..924] |
|
|
7.0E-97 | [1..915] | [5..900] |
|
|
8.0E-88 | [3..909] | [447..1315] |
|
|
3.0E-84 | [2..885] | [1755..2626] |
|
|
7.0E-83 | [4..900] | [419..1333] |
|
|
2.0E-80 | [24..908] | [624..1449] |
|
|
2.0E-80 | [68..909] | [598..1407] |
|
Region A: Residues: [1-185] |
1 11 21 31 41 51
| | | | | |
1 MQIPKYENKP FKPPRRVGSN KYTQLKPTAT AVTTAPISKA KVTVNLKRSI SAGPTLNLAK 60
61 KPNNLSSNEN TRYFTIMYRK PTTKKHKTWS GDGYATLKAS SDKLCFYNEA GKFLGSSMLP 120
121 SDSDSLFETL FKAGSNEVQL DYELKENAEI RSAKEALSQN MGNPSPPTTS TTETVPSTKN 180
181 DGGKY
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [186-254] |
1 11 21 31 41 51
| | | | | |
1 QMPLSQLFSL NTVKRFKSVT KQTNEHMTTV PKTSQNSKAK KYYPVFDVNK IDNPIVMNKN 60
61 AAAEVDVIV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| nucleic acid binding | 2.11222585187695 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 2.02893949194171 | bayes_pls_golite062009 |
| pyrophosphatase activity | 1.97909493766908 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 1.95844964816653 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 1.95658009428828 | bayes_pls_golite062009 |
| DNA binding | 1.7904783386531 | bayes_pls_golite062009 |
| transcription regulator activity | 1.68903321260301 | bayes_pls_golite062009 |
| ATPase activity | 1.42257610975945 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.2155186842031 | bayes_pls_golite062009 |
| helicase activity | 1.16085745407703 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| hydrolase activity | 0.98565595572967 | bayes_pls_golite062009 |
| ATPase activity, coupled | 0.732723553251109 | bayes_pls_golite062009 |
| DNA helicase activity | 0.72881469450553 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.725611289205392 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.720649395550746 | bayes_pls_golite062009 |
| nucleotide binding | 0.717697610309727 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.713814218071151 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.713752628021599 | bayes_pls_golite062009 |
| transcription factor activity | 0.603758349693077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.59513742813869 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.59513742813869 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.58862275163252 | bayes_pls_golite062009 |
| GTPase activity | 0.437665353870877 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.396187998943318 | bayes_pls_golite062009 |
| microtubule motor activity | 0.38363601832205 | bayes_pls_golite062009 |
| guanyl nucleotide binding | 0.296406132096546 | bayes_pls_golite062009 |
| GTP binding | 0.295705904888768 | bayes_pls_golite062009 |
| translation regulator activity | 0.29096092258568 | bayes_pls_golite062009 |
| guanyl ribonucleotide binding | 0.29028316917561 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.274994961137851 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.22150712609541 | bayes_pls_golite062009 |
| ATP binding | 0.19169045543599 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| adenyl ribonucleotide binding | 0.165732470448462 | bayes_pls_golite062009 |
| adenyl nucleotide binding | 0.162060759063149 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.144154288308693 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.114463153989353 | bayes_pls_golite062009 |
| motor activity | 0.0492172159259601 | bayes_pls_golite062009 |
|
Region A: Residues: [255-438] |
1 11 21 31 41 51
| | | | | |
1 DPLLGKFLRP HQREGVKFMY DCLMGLARPT IENPDIDCTT KSLVLENDSD ISGCLLADDM 60
61 GLGKTLMSIT LIWTLIRQTP FASKVSCSQS GIPLTGLCKK ILVVCPVTLI GNWKREFGKW 120
121 LNLSRIGVLT LSSRNSPDMD KMAVRNFLKV QRTYQVLIIG YEKLLSVSEE LEKNKHLIDM 180
181 LVCD
|
| Detection Method: | |
| Confidence: | 4.721246 |
| Match: | PF00176.10 |
| Description: | No description for PF00176.10 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [439-924] |
1 11 21 31 41 51
| | | | | |
1 EGHRLKNGAS KILNTLKSLD IRRKLLLTGT PIQNDLNEFF TIIDFINPGI LGSFASFKRR 60
61 FIIPITRARD TANRYNEELL EKGEERSKEM IEITKRFILR RTNAILEKYL PPKTDIILFC 120
121 KPYSQQILAF KDILQGARLD FGQLTFSSSL GLITLLKKVC NSPGLVGSDP YYKSHIKDTQ 180
181 SQDSYSRSLN SGKLKVLMTL LEGIRKGTKE KVVVVSNYTQ TLDIIENLMN MAGMSHCRLD 240
241 GSIPAKQRDS IVTSFNRNPA IFGFLLSAKS GGVGLNLVGR SRLILFDNDW NPSVDLQAMS 300
301 RIHRDGQKKP CFIYRLVTTG CIDEKILQRQ LMKNSLSQKF LGDSEMRNKE SSNDDLFNKE 360
361 DLKDLFSVHT DTKSNTHDLI CSCDGLGEEI EYPETNQQQN TVELRKRSTT TWTSALDLQK 420
421 KMNEAATNDD AKKSQYIRQC LVHYKHIDPA RQDELFDEVI TDSFTELKDS ITFAFVKPGE 480
481 ICLREQ
|
| Detection Method: | |
| Confidence: | 34.522879 |
| Match: | 1oyyA_ |
| Description: | Structure of the RecQ Catalytic Core bound to ATP-gamma-S |
Matching Structure (courtesy of the PDB): |
|
