YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: RDH54

Protein Complex Data

  PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
View Details Krogan NJ, et al. (2006) MNS1 RDH54 SIS2 TRM2

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #02 Alpha Factor Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

New Feature: Upload Your Own Microscopy Data

  PROTEIN(S) PUBLICATION
View Data RDH54 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..185] MSA 1.449995 View MSA. No confident structure predictions are available.
2 View Details [186..254] deduced N/A No confident structure predictions are available.
3 View Details [255..438] Pfam 4.721246 No description for PF00176.10 was found. No confident structure predictions are available.
4 View Details [439..924] PSI-BLAST 34.522879 Structure of the RecQ Catalytic Core bound to ATP-gamma-S

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • binding
  • 2.64537357529343 bayes_pls_golite062009
  • nucleic acid binding
  • 2.11222585187695 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
  • 2.02893949194171 bayes_pls_golite062009
  • pyrophosphatase activity
  • 1.97909493766908 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
  • 1.95844964816653 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
  • 1.95658009428828 bayes_pls_golite062009
  • DNA binding
  • 1.7904783386531 bayes_pls_golite062009
  • transcription regulator activity
  • 1.68903321260301 bayes_pls_golite062009
  • ATPase activity
  • 1.42257610975945 bayes_pls_golite062009
  • DNA-dependent ATPase activity
  • 1.2155186842031 bayes_pls_golite062009
  • helicase activity
  • 1.16085745407703 bayes_pls_golite062009
  • catalytic activity
  • 1.00104173493322 bayes_pls_golite062009
  • hydrolase activity
  • 0.98565595572967 bayes_pls_golite062009
  • ATPase activity, coupled
  • 0.732723553251109 bayes_pls_golite062009
  • DNA helicase activity
  • 0.72881469450553 bayes_pls_golite062009
  • purine nucleotide binding
  • 0.725611289205392 bayes_pls_golite062009
  • structure-specific DNA binding
  • 0.720649395550746 bayes_pls_golite062009
  • nucleotide binding
  • 0.717697610309727 bayes_pls_golite062009
  • purine ribonucleotide binding
  • 0.713814218071151 bayes_pls_golite062009
  • ribonucleotide binding
  • 0.713752628021599 bayes_pls_golite062009
  • transcription factor activity
  • 0.603758349693077 bayes_pls_golite062009
  • ATP-dependent helicase activity
  • 0.59513742813869 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
  • 0.59513742813869 bayes_pls_golite062009
  • double-stranded DNA binding
  • 0.58862275163252 bayes_pls_golite062009
  • GTPase activity
  • 0.437665353870877 bayes_pls_golite062009
  • structural constituent of ribosome
  • 0.396187998943318 bayes_pls_golite062009
  • microtubule motor activity
  • 0.38363601832205 bayes_pls_golite062009
  • guanyl nucleotide binding
  • 0.296406132096546 bayes_pls_golite062009
  • GTP binding
  • 0.295705904888768 bayes_pls_golite062009
  • translation regulator activity
  • 0.29096092258568 bayes_pls_golite062009
  • guanyl ribonucleotide binding
  • 0.29028316917561 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 0.274994961137851 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
  • 0.22150712609541 bayes_pls_golite062009
  • ATP binding
  • 0.19169045543599 bayes_pls_golite062009
  • protein binding
  • 0.170837278876362 bayes_pls_golite062009
  • adenyl ribonucleotide binding
  • 0.165732470448462 bayes_pls_golite062009
  • adenyl nucleotide binding
  • 0.162060759063149 bayes_pls_golite062009
  • substrate-specific transporter activity
  • 0.144154288308693 bayes_pls_golite062009
  • active transmembrane transporter activity
  • 0.114463153989353 bayes_pls_golite062009
  • motor activity
  • 0.0492172159259601 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle