| Protein: | RRI2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 645 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRI2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..645] | [1..645] |
|
Region A: Residues: [1-275] |
1 11 21 31 41 51
| | | | | |
1 MSDEDNNYDD FMLSDDEGME SIEMEEETDD EDKQNIEINE DNSQDDQDRG AARHKQHEQG 60
61 TFEKHDRVED ICERIFEQGQ ALKEDERYKE ARDLFLKIYY KEEFSSDESI ERLMTWKFKS 120
121 LIEILRLRAL QLYFQKNGAQ DLVLQILEDT ATMSVFLQRI DFQIDGNIFE LLSDTFEVLA 180
181 PKWERVFLFD IEKVDRENMI CKIDFQKNFM DQFQWILRKP GKDCKLQNLQ RIIRKKIFIA 240
241 VVWYQRLTMG NVFTPEISSQ IEILVKDNEC SSFEE
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [276-560] |
1 11 21 31 41 51
| | | | | |
1 NNDLESVSML LQYYILEYMN TARINNRRLF KKCIDFFEML ISKSLTFSQE SGLMVILYTS 60
61 KIVFILDSDS ENDLSFALMR YYDRKEELKN MFLYILKHLE EMGKLRERDI TSLFHKFILS 120
121 GFIFTSMILE AISTDKINPF GFEQVKIALG SPIVNVLEDV YRCFAQLELR QLNASISLIP 180
181 ELSVVLSGII QDIYYLAQTL KLWRKIARLY SCISISDIIS MLQISDDNEM TRDDLLTILM 240
241 RSIMKNRSVV YFKLDLTSDL VYFGDENKVM LPRCSKEEFR LMISP
|
| Detection Method: | |
| Confidence: | 8.19 |
| Match: | 1qoyA |
| Description: | Hemolysin E (HlyE, ClyA, SheA) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [561-645] |
1 11 21 31 41 51
| | | | | |
1 KDEETTEKAR LIDFEYVNDV AIYNNPTRIR TKSSKEFFNT LRKSRETVKL PRVSNQSNED 60
61 TFLPSYMKFS NKYLELCKLA SNNLE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.544 | b.36.1 | PDZ domain-like |
| View | Download | 0.516 | a.7.7 | BAG domain |
| View | Download | 0.515 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.515 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.498 | a.130.1 | Chorismate mutase II |
| View | Download | 0.444 | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.439 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.434 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.427 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.425 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.425 | b.55.1 | PH domain-like |
| View | Download | 0.395 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.390 | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.386 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.384 | d.189.1 | PX domain |
| View | Download | 0.381 | a.3.1 | Cytochrome c |
| View | Download | 0.350 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.343 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.320 | b.31.1 | EV matrix protein |
| View | Download | 0.313 | d.189.1 | PX domain |
| View | Download | 0.308 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.305 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.292 | d.223.1 | Polo domain |
| View | Download | 0.263 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.254 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.251 | d.203.1 | DsrC, the gamma subunit of dissimilatory sulfite reductase |
| View | Download | 0.251 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.245 | a.64.1 | Saposin |
| View | Download | 0.245 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.244 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.239 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.237 | a.2.5 | Prefoldin |
| View | Download | 0.233 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.228 | a.77.1 | DEATH domain |
| View | Download | 0.225 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.225 | b.33.1 | ISP domain |
| View | Download | 0.222 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.221 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.221 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.221 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.219 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.216 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.203 | a.4.7 | Ribosomal protein L11, C-terminal domain |
| View | Download | 0.203 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.201 | a.47.2 | t-snare proteins |
|
Region A: Residues: [414-559] |
1 11 21 31 41 51
| | | | | |
1 PFGFEQVKIA LGSPIVNVLE DVYRCFAQLE LRQLNASISL IPELSVVLSG IIQDIYYLAQ 60
61 TLKLWRKIAR LYSCISISDI ISMLQISDDN EMTRDDLLTI LMRSIMKNRS VVYFKLDLTS 120
121 DLVYFGDENK VMLPRCSKEE FRLMIS
|
| Detection Method: | |
| Confidence: | 1.38 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.45730892915196 | bayes_pls_golite062009 |
| binding | 3.37660003833383 | bayes_pls_golite062009 |
| DNA binding | 3.14200456972385 | bayes_pls_golite062009 |
| nucleic acid binding | 3.10521633426493 | bayes_pls_golite062009 |
| transcription factor activity | 2.53044123488453 | bayes_pls_golite062009 |
| transcription repressor activity | 2.13838000453063 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.28416365596732 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.21263034180893 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.12766532785895 | bayes_pls_golite062009 |
| transcription activator activity | 1.04520012516585 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.761838897494019 | bayes_pls_golite062009 |
| protein binding | 0.726445167461826 | bayes_pls_golite062009 |
| transcription factor binding | 0.534573074451495 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.49516964123412 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.224432853777564 | bayes_pls_golite062009 |
|
Region A: Residues: [560-645] |
1 11 21 31 41 51
| | | | | |
1 PKDEETTEKA RLIDFEYVND VAIYNNPTRI RTKSSKEFFN TLRKSRETVK LPRVSNQSNE 60
61 DTFLPSYMKF SNKYLELCKL ASNNLE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.544 | b.36.1 | PDZ domain-like |
| View | Download | 0.527 | b.36.1 | PDZ domain-like |
| View | Download | 0.516 | a.7.7 | BAG domain |
| View | Download | 0.515 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.515 | b.40.4 | Nucleic acid-binding proteins |
