| Protein: | VTH2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1549 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VTH2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1549] | [1..1549] |
|
|
0.0 | [7..1417] | [14..1406] |
|
|
0.0 | [717..1357] | [193..795] |
|
|
0.0 | [717..1357] | [193..794] |
|
Region A: Residues: [1-182] |
1 11 21 31 41 51
| | | | | |
1 MALFRALYII WVFLLIPLSN AEEFTPKVTR TLSRYVFDIV NFDDSNTLIR AEEDSVEISF 60
61 DAGENWKTID EIEEPIESFV VDPFRGHDRA FAFVKTAPKF YVTDDQGKSW RPLTIPISEK 120
121 ASNYFCDVTT HPIKKKHLII RCDLLTIKNS GLMYVGREIY TTNDGVSFSQ VKPSFGKIDG 180
181 HI
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [183-536] |
1 11 21 31 41 51
| | | | | |
1 STARCDFIKS SEDSDLGGND ASILCLFRNT EYIESTGSTI DKSELILSAD GGETFKELVQ 60
61 FKDKVVSRYE ILKHHVIVLT QDDMYNEMSS TNIWISNDVS TFQVARTPTK IRHVNMGQIH 120
121 EDSIGRIVLP VSRERDDEDS NQPGAAEVLI SDSEGLKFLP INWIPNNQFG YINVAYPGFL 180
181 KGTFFGSFHP FIEYSDRKRK YSRQKVREET KVSVDNGLTW TNLKVVDREN VDLFGCDVTK 240
241 PERCSLQTHF YDLRNLNPSA GIMMISGIVG DGSAYNWKEE KTFISRDSGL TWRLVHNSTG 300
301 LYTTGDLGNI IMYIPYRSNE NGDVPSKFYY SLDQGKTWGE YDLIMPIYPY RLVS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [537-722] |
1 11 21 31 41 51
| | | | | |
1 TISDGSGSKF ILTGTSITED PIFITYSIDF SAVFDYKSCE EGDFEDWNLA DGKCVNGAKY 60
61 KYRRRKQDAQ CLVKKAFKDL SLDETPCNSC TGSDYECSFE FVRDAKGDCI PDYNLIALSD 120
121 ICDKSKGKSV LVKPLQLIKG DKCKTPMKIE SVDIPCDEIP KEGSSDKEIV TTENKFDFEI 180
181 KFYQYF
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [723-1398] |
1 11 21 31 41 51
| | | | | |
1 DTVADESLVM LNSIGDAYIS HDGGQTIKRF DTDGEKIVEI VFNPYFNSSA YLFGSKGNIF 60
61 LTHDRGYSFM IAKLPEARQL GMPLDFSAKA QDTFIYYGGK NCESILSPEC HAVAYLTKDG 120
121 GETFTEMLDN AIHCEFAGTL FKYPSNDDMV MCQVKEKFSQ TRSLVSSTDF FQDDRKTVFE 180
181 NIIGYLSTGG YIIVAVPHED NELRAYVTND GAEFTEAKFP YDEDIGKQDA FTILGSEEGS 240
241 IFLHLATNLE SGHDFGNLLK SNSNGTSFVT LEHAVNRNTF GYVDFEKVQG LEGIIITNIV 300
301 SNSEKVGENK EDEQLKTKIT FNDGSDWNFL KPPKKDSEGK KFPCDSVSLD KCSLHLHGYT 360
361 ERKDIRDTYS SGSALGMMFG VGNVGDRLLP YEECSTFLTT DGGETWTEVK KGPHQWEYGD 420
421 HGGVLVLVPE NAETDSISYS TDFGKTWKDY KFCGDKVLVK DIITVPRDSA LRFLLFGEAK 480
481 NMGSGSFRTY TIDFRNIFER QCEFDITGRK RADFKYSPLG SRTGCLFGHK TEFLRKTDEK 540
541 CFIGNIPLSE FSRNVKNCPC TRQDFECDYN FYKASDGTCK LVKGLSSANG ADICKKEPDL 600
601 IEYYDSSGYR KIPLSTCKGG LKLDAHLAPH PCPGKEKAFR EKYSINTGAY ALVFVTILLV 660
661 IFFVAWFVYD RGIRRN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| hydrolase activity | 1.41591334858024 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.31047753739918 | bayes_pls_golite062009 |
| binding | 1.27390601147347 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.24376651680335 | bayes_pls_golite062009 |
| transporter activity | 1.10239137184953 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.949536954960448 | bayes_pls_golite062009 |
| clathrin binding | 0.86732360976983 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.781060752903079 | bayes_pls_golite062009 |
| peptidase activity | 0.685308067211416 | bayes_pls_golite062009 |
| catalytic activity | 0.660976915716016 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.660409340901077 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.56446678342098 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.486294295028555 | bayes_pls_golite062009 |
| channel activity | 0.465630241372545 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 0.465630241372545 | bayes_pls_golite062009 |
| substrate-specific channel activity | 0.455589501590218 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 0.44519612509266 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 0.437060564683891 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.423920288968837 | bayes_pls_golite062009 |
| potassium channel activity | 0.423464159542763 | bayes_pls_golite062009 |
| cation channel activity | 0.406614358442595 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 0.402494949667906 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 0.39571309893169 | bayes_pls_golite062009 |
| ion channel activity | 0.395022246697853 | bayes_pls_golite062009 |
| voltage-gated channel activity | 0.387394052239826 | bayes_pls_golite062009 |
| hydrolase activity, hydrolyzing O-glycosyl compounds | 0.384942719946392 | bayes_pls_golite062009 |
| protein binding | 0.358634999959382 | bayes_pls_golite062009 |
| voltage-gated potassium channel activity | 0.326855275194847 | bayes_pls_golite062009 |
| ligand-gated channel activity | 0.300015711462657 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 0.300015711462657 | bayes_pls_golite062009 |
| gated channel activity | 0.266124158878986 | bayes_pls_golite062009 |
| hydrolase activity, acting on glycosyl bonds | 0.258360510712111 | bayes_pls_golite062009 |
| sugar binding | 0.209524155254648 | bayes_pls_golite062009 |
| monosaccharide binding | 0.165171466772385 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.0429267214247906 | bayes_pls_golite062009 |
|
Region A: Residues: [1399-1549] |
1 11 21 31 41 51
| | | | | |
1 GGFSRFEEIR LGDDGLIENN RTDRVVNIIV RLGLCISLIT KSAFQRAKAG TAQLSSKFRA 60
61 RFGNKKGATY SSLLHDQLSD EPDGFHEDSN DLSSFRGQGS NSEIEQEDVD TSQQEHTSRT 120
121 DLLGASNIPD ALPARSASHE SDLAAARSED K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
