| Protein: | CE38104 |
| Organism: | Caenorhabditis elegans |
| Length: | 492 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE38104.
| Description | E-value | Query Range |
Subject Range |
|
|
563.0 | [0..9] | [491..1160] |
|
Region A: Residues: [1-67] |
1 11 21 31 41 51
| | | | | |
1 MSFVCGISGE LTEDPVVSQV SGHIFDRRLI VKFIAENGTD PISHGELSED QLVSLKSGGT 60
61 GSAPRNV
|
| Detection Method: |  |
| Confidence: | 9.522879 |
| Match: | 1n87A |
| Description: | Pre-mRNA splicing factor Prp19 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ubiquitin-protein ligase activity | 10.2497392096259 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 10.0460587929138 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 8.99384576623969 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 7.6988425139962 | bayes_pls_golite062009 |
| 4.77196423114965 | bayes_pls_golite062009 | |
| ligase activity | 4.65189154176918 | bayes_pls_golite062009 |
| RNA binding | 3.04658201081989 | bayes_pls_golite062009 |
| binding | 2.78710909602478 | bayes_pls_golite062009 |
| transcription regulator activity | 2.72498741013971 | bayes_pls_golite062009 |
| protein binding | 2.64803540957326 | bayes_pls_golite062009 |
| nucleic acid binding | 2.32387297115017 | bayes_pls_golite062009 |
| DNA binding | 2.00904221080834 | bayes_pls_golite062009 |
| transcription repressor activity | 1.98209395225978 | bayes_pls_golite062009 |
| SMAD binding | 1.93335489484338 | bayes_pls_golite062009 |
| ubiquitin-ubiquitin ligase activity | 1.37401357060257 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.34503687064945 | bayes_pls_golite062009 |
| transcription factor activity | 1.22579085356684 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 1.2126425713931 | bayes_pls_golite062009 |
| transcription factor binding | 1.11842175076436 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 1.03469202541773 | bayes_pls_golite062009 |
| copper ion binding | 0.649716953783871 | bayes_pls_golite062009 |
| hydrolase activity | 0.52386813728704 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 0.50197530717959 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.384990496120483 | bayes_pls_golite062009 |
| SUMO polymer binding | 0.33041248422054 | bayes_pls_golite062009 |
| cation binding | 0.27118370366296 | bayes_pls_golite062009 |
| metal ion binding | 0.27118370366296 | bayes_pls_golite062009 |
| ubiquitin thiolesterase activity | 0.265769062717221 | bayes_pls_golite062009 |
| ion binding | 0.265633945008889 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.233838999434784 | bayes_pls_golite062009 |
| transition metal ion binding | 0.219773564054437 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
| transcription activator activity | 0.126093965701234 | bayes_pls_golite062009 |
| enzyme binding | 0.104373352314595 | bayes_pls_golite062009 |
|
Region A: Residues: [68-156] |
1 11 21 31 41 51
| | | | | |
1 SGTSIPSLLK MLQDEWDTVM LNSFSLRQQL QIARQELSHS LYQHDAACRV ISRLSKELTA 60
61 AREALSTLKP HTSAKVDDDV SIDESEDQQ
|
| Detection Method: | |
| Confidence: | 34.221849 |
| Match: | 2pm7B |
| Description: | No description for 2pm7B was found. |
|
Region A: Residues: [157-492] |
1 11 21 31 41 51
| | | | | |
1 GLSEAILAKL EEKSKSLTAE RKQRGKNLPE GLAKTEELAE LKQTASHTGI HSTGTPGITA 60
61 LDIKGNLSLT GGIDKTVVLY DYEKEQVMQT FKGHNKKINA VVLHPDNITA ISASADSHIR 120
121 VWSATDSSSK AIIDVHQAPV TDISLNASGD YILSASDDSY WAFSDIRSGK SLCKVSVEPG 180
181 SQIAVHSIEF HPDGLIFGTG AADAVVKIWD LKNQTVAAAF PGHTAAVRSI AFSENGYYLA 240
241 TGSEDGEVKL WDLRKLKNLK TFANEEKQPI NSLSFDMTGT FLGIGGQKVQ VLHVKSWSEV 300
301 VSLSDHSGPV TGVRFGENAR SLVTCSLDKS LRVFSF
|
| Detection Method: | |
| Confidence: | 74.0 |
| Match: | 1gg2B |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ubiquitin-protein ligase activity | 7.6976390971701 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 7.38724968585043 | bayes_pls_golite062009 |
| 6.67009948605948 | bayes_pls_golite062009 | |
| acid-amino acid ligase activity | 6.41826641115519 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 5.36089569430187 | bayes_pls_golite062009 |
| GTPase activity | 4.02994814377904 | bayes_pls_golite062009 |
| RNA binding | 3.77273677738815 | bayes_pls_golite062009 |
| snoRNA binding | 2.69983094099712 | bayes_pls_golite062009 |
| structural molecule activity | 2.6914565031145 | bayes_pls_golite062009 |
| ligase activity | 2.55043310798974 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| transcription regulator activity | 2.3610959773142 | bayes_pls_golite062009 |
| nucleic acid binding | 2.30918780727915 | bayes_pls_golite062009 |
| translation initiation factor activity | 2.29806492548141 | bayes_pls_golite062009 |
| transcription repressor activity | 2.29049708962212 | bayes_pls_golite062009 |
| protein binding | 2.26925404328312 | bayes_pls_golite062009 |
| dynactin binding | 2.07556426531897 | bayes_pls_golite062009 |
| DNA binding | 1.71685536470455 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.41752877005447 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.26395898062853 | bayes_pls_golite062009 |
| transporter activity | 1.17433526848815 | bayes_pls_golite062009 |
| receptor activity | 1.12819778129653 | bayes_pls_golite062009 |
| G-protein-coupled receptor binding | 1.11754260203517 | bayes_pls_golite062009 |
| actin binding | 1.08902852052152 | bayes_pls_golite062009 |
| transcription factor activity | 1.08768505897883 | bayes_pls_golite062009 |
| mRNA binding | 1.05053985350578 | bayes_pls_golite062009 |
| actin filament binding | 0.976656531652978 | bayes_pls_golite062009 |
| molecular transducer activity | 0.974380908248463 | bayes_pls_golite062009 |
| signal transducer activity | 0.974380908248463 | bayes_pls_golite062009 |
| type 1 angiotensin receptor binding | 0.920323565472959 | bayes_pls_golite062009 |
| angiotensin receptor binding | 0.920323565472959 | bayes_pls_golite062009 |
| kinase activity | 0.807669232329985 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.805273887494167 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.703671430935754 | bayes_pls_golite062009 |
| dynein binding | 0.67053085134802 | bayes_pls_golite062009 |
| protein transporter activity | 0.644350648477191 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.634547834947756 | bayes_pls_golite062009 |
| protein kinase activity | 0.544118712921054 | bayes_pls_golite062009 |
| transcription factor binding | 0.489473003915035 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.446034974847705 | bayes_pls_golite062009 |
| tubulin binding | 0.418259033722167 | bayes_pls_golite062009 |
| microtubule binding | 0.360612852884949 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.30761651528651 | bayes_pls_golite062009 |
| hydrolase activity | 0.181211933860468 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.161639372576406 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.0803897416817422 | bayes_pls_golite062009 |
| receptor binding | 0.0390635451962911 | bayes_pls_golite062009 |
| kinase binding | 0.0366162235750993 | bayes_pls_golite062009 |
| protein kinase binding | 0.00858004043229577 | bayes_pls_golite062009 |
