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View Structure Prediction Details

Protein: gi|42571801
Organism: Arabidopsis thaliana
Length: 488 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42571801.

Description E-value Query
Range
Subject
Range
GATB_ARATH - Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Arabidopsis thaliana G...
727.0 [0..1] [488..1]

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Predicted Domain #1
Region A:
Residues: [1-488]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTLLRTIQ LNQFSLLGTS LLRRRRSNNF SVRSCGSQTT TTHEAKQSSP TRVAPKNHKS  60
   61 NQLDEILRDY EAVIGIETHV QLSTLTKAFC SCSNNYGSYP NTSICPVCMG LPGALPVLNS 120
  121 KVVEFGVRLG LALNCDLSLK SKFDRKQYFY PDLPKGYQIS QFDIPIASGG YVDVDIPLEF 180
  181 GGGHRRFGIT RVHMEEDAGK LLHSDTGDYS QVDLNRAGVP LLEIVSEPDM RSGIEAAEYA 240
  241 CEMQRIARYL GVSNGNMQEG SLRCDVNISI RPIGQAEFGT KVEIKNLNAF SAISRAIDFE 300
  301 ISRQALLYNQ GKADQIVTET RLWEEGAQKT VTMRKKEGLA DYRYFPEPDL PEVILTQEYV 360
  361 DSIRASLPEL PEAKRRRYEA MGLGMQDVLF LANDVSVAEY FDAVIGKGAE VKLAANWIMS 420
  421 DIAAYLKNEK LSINDIKLTP QELAELIAAI KDGTISGKIG KEILFELLAK GGTVKGMIKA 480
  481 KDLVQANN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 178.0
Match: 2df4B
Description: No description for 2df4B was found.

Predicted functions:

Term Confidence Notes
ligase activity 5.28014676041088 bayes_pls_golite062009
catalytic activity 1.08973967683802 bayes_pls_golite062009
ammonia ligase activity 0.978763138251862 bayes_pls_golite062009
glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity 0.873485093374459 bayes_pls_golite062009
acid-ammonia (or amide) ligase activity 0.632807059205458 bayes_pls_golite062009
binding 0.601875498896385 bayes_pls_golite062009
nucleic acid binding 0.545649763280687 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.0373860162850559 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle