| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.0749965632] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| SCF ubiquitin ligase complex | 2.779E-6 | 2 | 11 | 2 | 6292 |
| cullin-RING ubiquitin ligase complex | 4.5979E-6 | 2 | 14 | 2 | 6292 |
| ubiquitin ligase complex | 4.5626E-5 | 2 | 43 | 2 | 6292 |
| cellular bud neck contractile ring | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| actomyosin contractile ring | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| contractile ring | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| nuclear ubiquitin ligase complex | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| cell division site | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| cell division site part | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ubiquitin-protein ligase activity | 8.0641E-5 | 2 | 57 | 2 | 6292 |
| small conjugating protein ligase activity | 9.5546E-5 | 2 | 62 | 2 | 6292 |
| acid-amino acid ligase activity | 1.2556E-4 | 2 | 71 | 2 | 6292 |
| ligase activity, forming carbon-nitrogen bonds | 2.2085E-4 | 2 | 94 | 2 | 6292 |
| ligase activity | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| protein binding | 9.4468E-3 | 2 | 612 | 2 | 6292 |