YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Ho Y. et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature. 2002 Jan 10;415(6868):180-3.
Notes: This molecular complex record represents a population of complexes co-purified by immunoprecipitation of FLAG-tagged Pat1. The topolgies of protein complexes in this experiment are unknown.
Complex Size: 8 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
DCP2
  • nucleus
  • cytoplasm
  • cytoplasmic mRNA processing body
  • deadenylation-independent decapping of nuclear-transcribed mRNA
  • deadenylation-dependent decapping of nuclear-transcribed mRNA
  • mRNA catabolic process
  • mRNA binding
  • m7G(5')pppN diphosphatase activity
  • hydrolase activity
  • DHH1
  • cytoplasm
  • cytoplasmic mRNA processing body
  • nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
  • deadenylation-dependent decapping of nuclear-transcribed mRNA
  • protein binding
  • RNA helicase activity
  • GPG1
  • cellular_component
  • signal transduction
  • signal transducer activity
  • LSM1
  • mRNA cap binding complex
  • cytoplasmic mRNA processing body
  • deadenylation-dependent decapping of nuclear-transcribed mRNA
  • mRNA catabolic process
  • nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
  • RNA binding
  • RNA cap binding
  • LSM4
  • U4/U6 x U5 tri-snRNP complex
  • nucleolus
  • U6 snRNP
  • small nucleolar ribonucleoprotein complex
  • mRNA catabolic process
  • nuclear mRNA splicing, via spliceosome
  • RNA binding
  • LSM7
  • U4/U6 x U5 tri-snRNP complex
  • nucleolus
  • U6 snRNP
  • small nucleolar ribonucleoprotein complex
  • telomere maintenance
  • mRNA catabolic process
  • nuclear mRNA splicing, via spliceosome
  • RNA binding
  • PAT1
  • cytoplasmic mRNA processing body
  • deadenylation-dependent decapping of nuclear-transcribed mRNA
  • chromosome segregation
  • regulation of translational initiation
  • molecular_function
  • PEX19
  • cytosol
  • protein targeting to peroxisome
  • protein import into peroxisome membrane
  • peroxisome organization
  • protein folding
  • protein binding
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    cytoplasmic mRNA processing body 1.4564E-9 8 15 4 6292
    ribonucleoprotein complex 7.018E-6 8 514 6 6292
    U6 snRNP 7.7367E-5 8 11 2 6292
    U4/U6 x U5 tri-snRNP complex 6.8844E-4 8 32 2 6292
    small nuclear ribonucleoprotein complex 2.6577E-3 8 63 2 6292
    small nucleolar ribonucleoprotein complex 3.4584E-3 8 72 2 6292
    mRNA cap binding complex 3.8101E-3 8 3 1 6292
    macromolecular complex 5.1894E-3 8 1635 6 6292
    RNA cap binding complex 7.6075E-3 8 6 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    mRNA catabolic process 3.8374E-11 8 69 6 6292
    RNA catabolic process 9.5903E-11 8 80 6 6292
    deadenylation-dependent decapping of nuclear-transcribed mRNA 3.528E-10 8 11 4 6292
    nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 1.861E-8 8 27 4 6292
    mRNA metabolic process 3.7156E-8 8 213 6 6292
    nuclear-transcribed mRNA catabolic process 7.7836E-8 8 38 4 6292
    cellular macromolecule catabolic process 1.3771E-7 8 265 6 6292
    macromolecule catabolic process 2.5613E-7 8 294 6 6292
    cellular catabolic process 1.9869E-6 8 415 6 6292
    catabolic process 5.6904E-6 8 496 6 6292
    RNA metabolic process 2.5461E-4 8 954 6 6292
    nucleic acid metabolic process 2.3473E-3 8 1415 6 6292
    nuclear-transcribed mRNA catabolic process, deadenylation-independent decay 2.5415E-3 8 2 1 6292
    deadenylation-independent decapping of nuclear-transcribed mRNA 2.5415E-3 8 2 1 6292
    protein import into peroxisome membrane 3.8101E-3 8 3 1 6292
    nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 4.1016E-3 8 1566 6 6292
    cellular macromolecule metabolic process 4.5244E-3 8 2285 7 6292
    macromolecule metabolic process 5.4192E-3 8 2349 7 6292
    nuclear mRNA splicing, via spliceosome 6.4515E-3 8 99 2 6292
    RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 6.579E-3 8 100 2 6292
    RNA splicing, via transesterification reactions 7.5036E-3 8 107 2 6292
    cellular nitrogen compound metabolic process 7.9712E-3 8 1770 6 6292
    nitrogen compound metabolic process 8.4927E-3 8 1791 6 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    RNA binding 6.6069E-4 8 367 4 6292
    binding 1.4278E-3 8 1294 6 6292
    RNA cap binding 2.5415E-3 8 2 1 6292
    nucleic acid binding 6.1432E-3 8 666 4 6292
    m7G(5')pppN diphosphatase activity 6.3431E-3 8 5 1 6292

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle