| From Publication: | Ho Y. et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature. 2002 Jan 10;415(6868):180-3. |
| Notes: | This molecular complex record represents a population of complexes co-purified by immunoprecipitation of FLAG-tagged Rpc40. The topolgies of protein complexes in this experiment are unknown. |
| Complex Size: | 11 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| RNA polymerase complex | 1.5536E-7 | 11 | 31 | 4 | 6292 |
| nuclear DNA-directed RNA polymerase complex | 1.5536E-7 | 11 | 31 | 4 | 6292 |
| DNA-directed RNA polymerase complex | 1.5536E-7 | 11 | 31 | 4 | 6292 |
| DNA-directed RNA polymerase I complex | 1.4322E-6 | 11 | 14 | 3 | 6292 |
| nucleolar part | 5.4203E-5 | 11 | 45 | 3 | 6292 |
| DNA-directed RNA polymerase III complex | 3.7257E-4 | 11 | 17 | 2 | 6292 |
| nuclear lumen | 6.0735E-4 | 11 | 453 | 5 | 6292 |
| nuclear part | 8.5482E-4 | 11 | 1103 | 7 | 6292 |
| nucleus | 1.0879E-3 | 11 | 2041 | 9 | 6292 |
| organelle lumen | 3.369E-3 | 11 | 660 | 5 | 6292 |
| intracellular organelle lumen | 3.369E-3 | 11 | 660 | 5 | 6292 |
| membrane-enclosed lumen | 4.3723E-3 | 11 | 700 | 5 | 6292 |
| nucleolus | 5.0257E-3 | 11 | 211 | 3 | 6292 |
| protein complex | 6.9351E-3 | 11 | 1137 | 6 | 6292 |
| nucleoplasm | 9.3783E-3 | 11 | 264 | 3 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transcription from RNA polymerase I promoter | 1.5733E-5 | 11 | 30 | 3 | 6292 |
| transcription, DNA-dependent | 8.2682E-5 | 11 | 503 | 6 | 6292 |
| RNA biosynthetic process | 8.7445E-5 | 11 | 508 | 6 | 6292 |
| transcription | 1.3973E-4 | 11 | 552 | 6 | 6292 |
| transcription from RNA polymerase III promoter | 1.8876E-3 | 11 | 38 | 2 | 6292 |
| RNA metabolic process | 2.7847E-3 | 11 | 954 | 6 | 6292 |
| cellular macromolecule biosynthetic process | 8.6337E-3 | 11 | 1187 | 6 | 6292 |
| macromolecule biosynthetic process | 8.7077E-3 | 11 | 1189 | 6 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| RNA polymerase activity | 2.2838E-7 | 11 | 34 | 4 | 6292 |
| DNA-directed RNA polymerase activity | 2.2838E-7 | 11 | 34 | 4 | 6292 |
| nucleotidyltransferase activity | 5.1881E-6 | 11 | 168 | 5 | 6292 |
| transferase activity, transferring phosphorus-containing groups | 4.2699E-4 | 11 | 420 | 5 | 6292 |
| threo-3-hydroxyaspartate ammonia-lyase activity | 1.7483E-3 | 11 | 1 | 1 | 6292 |
| serine racemase activity | 1.7483E-3 | 11 | 1 | 1 | 6292 |
| racemase and epimerase activity, acting on amino acids and derivatives | 3.4937E-3 | 11 | 2 | 1 | 6292 |
| amino-acid racemase activity | 3.4937E-3 | 11 | 2 | 1 | 6292 |
| transferase activity | 7.7048E-3 | 11 | 797 | 5 | 6292 |
| racemase and epimerase activity | 8.7135E-3 | 11 | 5 | 1 | 6292 |