YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Gavin A.C. et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature. 2006 Mar 30;440(7084):631-6. Epub 2006 Jan 22.
Notes: From the published set of protein complexes (core proteins only)
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

COPII vesicle coat 7.6075E-3 6 8 1 6292
ER to Golgi transport vesicle membrane 7.6075E-3 6 8 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleoside diphosphate phosphorylation 9.5359E-4 6 1 1 6292
nucleotide phosphorylation 9.5359E-4 6 1 1 6292
arginyl-tRNA aminoacylation 1.9064E-3 6 2 1 6292
small molecule biosynthetic process 2.1197E-3 6 310 3 6292
small molecule metabolic process 2.5914E-3 6 760 4 6292
carboxylic acid metabolic process 2.6068E-3 6 333 3 6292
organic acid metabolic process 2.6068E-3 6 333 3 6292
oxoacid metabolic process 2.6068E-3 6 333 3 6292
nucleoside diphosphate metabolic process 2.8585E-3 6 3 1 6292
cellular ketone metabolic process 2.9111E-3 6 346 3 6292
nucleobase, nucleoside, nucleotide and nucleic acid biosynthetic process 2.9239E-3 6 90 2 6292
nucleobase, nucleoside and nucleotide biosynthetic process 2.9239E-3 6 90 2 6292
cellular biosynthetic process 4.5365E-3 6 1567 5 6292
biosynthetic process 5.0373E-3 6 1602 5 6292
monocarboxylic acid metabolic process 6.3845E-3 6 134 2 6292
purine base biosynthetic process 6.6592E-3 6 7 1 6292
folic acid and derivative metabolic process 8.5551E-3 6 9 1 6292
nucleobase, nucleoside and nucleotide metabolic process 8.688E-3 6 157 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ligase activity 2.52E-4 6 150 3 6292
aminoacyl-tRNA ligase activity 5.2472E-4 6 38 2 6292
ligase activity, forming carbon-oxygen bonds 5.2472E-4 6 38 2 6292
ligase activity, forming aminoacyl-tRNA and related compounds 5.2472E-4 6 38 2 6292
nucleoside diphosphate kinase activity 9.5359E-4 6 1 1 6292
catalytic activity 1.5845E-3 6 2150 6 6292
methylenetetrahydrofolate dehydrogenase (NADP+) activity 1.9064E-3 6 2 1 6292
arginine-tRNA ligase activity 1.9064E-3 6 2 1 6292
aspartate-tRNA ligase activity 1.9064E-3 6 2 1 6292
methenyltetrahydrofolate cyclohydrolase activity 1.9064E-3 6 2 1 6292
formate-tetrahydrofolate ligase activity 1.9064E-3 6 2 1 6292
methylenetetrahydrofolate dehydrogenase activity 2.8585E-3 6 3 1 6292
glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity 2.8585E-3 6 3 1 6292
glyceraldehyde-3-phosphate dehydrogenase activity 2.8585E-3 6 3 1 6292
cyclohydrolase activity 9.5019E-3 6 10 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle