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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 3 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin assembly complex 5.3017E-9 3 12 3 6292
chromosome, centromeric region 3.3284E-4 3 67 2 6292
chromosomal part 4.1335E-3 3 237 2 6292
chromatin silencing complex 4.2857E-3 3 9 1 6292
nuclear part 5.3751E-3 3 1103 3 6292
chromosome 5.5058E-3 3 274 2 6292
protein complex 5.8881E-3 3 1137 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleosome assembly 1.3495E-8 3 16 3 6292
chromatin assembly 2.3352E-8 3 19 3 6292
nucleosome organization 8.8056E-8 3 29 3 6292
DNA packaging 1.1953E-7 3 32 3 6292
chromatin assembly or disassembly 1.5773E-7 3 35 3 6292
protein-DNA complex assembly 2.2024E-7 3 39 3 6292
DNA conformation change 7.4359E-7 3 58 3 6292
negative regulation of gene expression, epigenetic 3.8967E-6 3 100 3 6292
chromatin silencing 3.8967E-6 3 100 3 6292
gene silencing 3.8967E-6 3 100 3 6292
regulation of gene expression, epigenetic 3.8967E-6 3 100 3 6292
negative regulation of transcription, DNA-dependent 1.5247E-5 3 157 3 6292
negative regulation of RNA metabolic process 1.5543E-5 3 158 3 6292
negative regulation of gene expression 1.7394E-5 3 164 3 6292
negative regulation of transcription 1.7394E-5 3 164 3 6292
negative regulation of macromolecule biosynthetic process 2.1158E-5 3 175 3 6292
negative regulation of nitrogen compound metabolic process 2.3035E-5 3 180 3 6292
negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 2.3035E-5 3 180 3 6292
cellular macromolecular complex assembly 2.3816E-5 3 182 3 6292
negative regulation of biosynthetic process 2.6687E-5 3 189 3 6292
negative regulation of cellular biosynthetic process 2.6687E-5 3 189 3 6292
negative regulation of macromolecule metabolic process 2.7985E-5 3 192 3 6292
chromatin organization 3.3104E-5 3 203 3 6292
negative regulation of cellular metabolic process 3.6143E-5 3 209 3 6292
negative regulation of metabolic process 3.6667E-5 3 210 3 6292
negative regulation of cellular process 6.2006E-5 3 250 3 6292
negative regulation of biological process 6.4274E-5 3 253 3 6292
cellular macromolecular complex subunit organization 6.8975E-5 3 259 3 6292
macromolecular complex assembly 8.8168E-5 3 281 3 6292
macromolecular complex subunit organization 1.8121E-4 3 357 3 6292
regulation of transcription, DNA-dependent 1.8274E-4 3 358 3 6292
regulation of RNA metabolic process 1.9053E-4 3 363 3 6292
regulation of transcription 2.2565E-4 3 384 3 6292
cellular component assembly 2.2742E-4 3 385 3 6292
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 2.85E-4 3 415 3 6292
regulation of nitrogen compound metabolic process 2.8707E-4 3 416 3 6292
regulation of gene expression 3.5155E-4 3 445 3 6292
regulation of macromolecule biosynthetic process 3.7833E-4 3 456 3 6292
regulation of cellular biosynthetic process 4.1966E-4 3 472 3 6292
regulation of biosynthetic process 4.2234E-4 3 473 3 6292
regulation of macromolecule metabolic process 4.639E-4 3 488 3 6292
transcription, DNA-dependent 5.081E-4 3 503 3 6292
RNA biosynthetic process 5.2344E-4 3 508 3 6292
regulation of primary metabolic process 5.4224E-4 3 514 3 6292
regulation of cellular metabolic process 6.1504E-4 3 536 3 6292
regulation of metabolic process 6.5376E-4 3 547 3 6292
transcription 6.7188E-4 3 552 3 6292
chromosome organization 6.8292E-4 3 555 3 6292
cellular component biogenesis 1.3367E-3 3 694 3 6292
regulation of cellular process 2.0181E-3 3 796 3 6292
regulation of biological process 2.2389E-3 3 824 3 6292
DNA repair 2.7234E-3 3 192 2 6292
RNA metabolic process 3.4763E-3 3 954 3 6292
response to DNA damage stimulus 4.0991E-3 3 236 2 6292
organelle organization 5.734E-3 3 1127 3 6292
cellular response to stress 6.1581E-3 3 290 2 6292
cellular macromolecule biosynthetic process 6.7003E-3 3 1187 3 6292
macromolecule biosynthetic process 6.7343E-3 3 1189 3 6292
biological regulation 7.1507E-3 3 1213 3 6292
gene expression 8.4626E-3 3 1283 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription regulator activity 1.5509E-4 3 339 3 6292

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Created and Maintained by: Michael Riffle