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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 3.3636E-10 8 211 7 6292
nuclear lumen 7.205E-8 8 453 7 6292
non-membrane-bounded organelle 2.8409E-7 8 959 8 6292
intracellular non-membrane-bounded organelle 2.8409E-7 8 959 8 6292
organelle lumen 9.8757E-7 8 660 7 6292
intracellular organelle lumen 9.8757E-7 8 660 7 6292
small nucleolar ribonucleoprotein complex 1.0661E-6 8 72 4 6292
membrane-enclosed lumen 1.4845E-6 8 700 7 6292
nuclear outer membrane 2.1849E-6 8 86 4 6292
nuclear membrane 3.5448E-6 8 97 4 6292
nuclear part 3.3951E-5 8 1103 7 6292
outer membrane 3.967E-5 8 178 4 6292
organelle outer membrane 3.967E-5 8 178 4 6292
nuclear envelope 6.152E-5 8 199 4 6292
nuclear membrane-endoplasmic reticulum network 1.1219E-4 8 232 4 6292
ribonucleoprotein complex 1.6235E-4 8 514 5 6292
90S preribosome 1.9058E-4 8 17 2 6292
intracellular organelle part 2.9704E-4 8 2282 8 6292
organelle part 2.9704E-4 8 2282 8 6292
preribosome 7.7767E-4 8 34 2 6292
endomembrane system 9.0006E-4 8 398 4 6292
nucleolar part 1.3628E-3 8 45 2 6292
nucleus 2.1521E-3 8 2041 7 6292
envelope 2.2101E-3 8 505 4 6292
organelle envelope 2.2101E-3 8 505 4 6292
box C/D snoRNP complex 2.5415E-3 8 2 1 6292
Noc4p-Nop14p complex 2.5415E-3 8 2 1 6292
membrane part 6.0097E-3 8 662 4 6292
Noc complex 6.3431E-3 8 5 1 6292
organelle membrane 7.0609E-3 8 692 4 6292
preribosome, small subunit precursor 7.6075E-3 8 6 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA processing 9.6299E-12 8 128 7 6292
rRNA metabolic process 1.5649E-11 8 137 7 6292
ribosome biogenesis 7.7416E-11 8 346 8 6292
ribonucleoprotein complex biogenesis 1.4517E-10 8 374 8 6292
ncRNA processing 3.8413E-10 8 215 7 6292
ncRNA metabolic process 1.3532E-9 8 257 7 6292
RNA processing 2.1096E-8 8 380 7 6292
cellular component biogenesis 2.1131E-8 8 694 8 6292
maturation of SSU-rRNA 4.7479E-7 8 59 4 6292
RNA metabolic process 1.2557E-5 8 954 7 6292
gene expression 9.518E-5 8 1283 7 6292
nucleic acid metabolic process 1.8497E-4 8 1415 7 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 3.6683E-4 8 1566 7 6292
ribosomal small subunit biogenesis 4.5282E-4 8 26 2 6292
cellular nitrogen compound metabolic process 8.3438E-4 8 1770 7 6292
nitrogen compound metabolic process 9.0281E-4 8 1791 7 6292
ribosome assembly 2.7417E-3 8 64 2 6292
organelle assembly 3.1803E-3 8 69 2 6292
cellular macromolecule metabolic process 4.5244E-3 8 2285 7 6292
macromolecule metabolic process 5.4192E-3 8 2349 7 6292
ribonucleoprotein complex assembly 5.5921E-3 8 92 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle