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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 2.3635E-7 6 211 5 6292
nuclear lumen 1.0695E-5 6 453 5 6292
organelle lumen 6.864E-5 6 660 5 6292
intracellular organelle lumen 6.864E-5 6 660 5 6292
membrane-enclosed lumen 9.1664E-5 6 700 5 6292
non-membrane-bounded organelle 4.2731E-4 6 959 5 6292
intracellular non-membrane-bounded organelle 4.2731E-4 6 959 5 6292
nuclear part 8.4241E-4 6 1103 5 6292
Noc2p-Noc3p complex 1.9064E-3 6 2 1 6292
Noc1p-Noc2p complex 1.9064E-3 6 2 1 6292
Noc complex 4.7604E-3 6 5 1 6292
preribosome, large subunit precursor 8.5551E-3 6 9 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 2.6536E-8 6 346 6 6292
ribonucleoprotein complex biogenesis 4.2465E-8 6 374 6 6292
cellular component biogenesis 1.7662E-6 6 694 6 6292
rRNA processing 2.3759E-6 6 128 4 6292
rRNA metabolic process 3.1205E-6 6 137 4 6292
ncRNA processing 1.8849E-5 6 215 4 6292
ncRNA metabolic process 3.8238E-5 6 257 4 6292
RNA processing 1.7827E-4 6 380 4 6292
RNA metabolic process 6.0989E-3 6 954 4 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle