Protein Overview: SCNBA_RAT

General Information:
Name(s) found:	SCNBA_RAT [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|9507065\|ref\|NP_062138.1\| sodium channel, voltage-gated, type XI, alpha [Rattus norvegicus] [NCBI NR] pir\|\|T42388 sodium channel alpha chain - rat [NCBI NR] gi\|56748616\|sp\|O88457.1\|SCNBA_RAT RecName: Full=Sodium channel protein type 11 subunit alpha; AltName: Full=Sodium channel protein type XI subunit alpha; AltName: Full=Voltage-gated sodium channel subunit alpha Nav1.9; AltName: Full=Sensory neuron sodium [NCBI NR] gi\|4741729\|emb\|CAB41850.1\| voltage-gated sodium channel alpha subunit [Rattus norvegicus] [NCBI NR] gi\|3372615\|gb\|AAC40199.1\| voltage-gated Na channel alpha subunit NaN; tetrodotoxin-resistant voltage-gated Na channel; TTX-R voltage-gated Na channel [Rattus norvegicus] [NCBI NR] Sodium channel protein type 11 subunit alpha OS=Rattus norvegicus GN=Scn11a PE=1 SV=1 [Swiss-Prot] Sodium channel protein type 11 subunit alpha (Sodium channel protein type XI subunit alpha) (Voltage-gated sodium channel subunit alpha Nav1.9) (Sensory neuron sodium channel 2) (NaN) - Rattus norvegicus (Rat) [Swiss-Prot] sodium channel, voltage-gated, type11, alpha polypeptide; sodium channel, voltage-gated, type XI, alpha polypeptide; sodium channel, voltage-gated, type 11, alpha polypeptide; sodium channel voltage-gated type 11 alpha polypeptide; sodium channel voltage- [HMR_022704-rand.fasta] sodium channel, voltage-gated, type11, alpha polypeptide; sodium channel voltage-gated type 11 alpha polypeptide; sodium channel voltage-gated type XI alpha polypeptide; sodium channel, voltage-gated, type XI, alpha polypeptide; sodium channel, voltage-ga [071204_hmrz_cont.fasta] sodium channel, voltage-gated, type11, alpha polypeptide [Rattus norvegicus]gi\|4741729\|emb\|CAB41850.1\| voltage-gated sodium channel alpha subunit [Rattus norvegicus]gi\|3372615\|gb\|AAC40199.1\| voltage-gated Na channel alpha subunit NaN; tetrodotoxin-resis [nrdb_11152004_Chlamydomonas] (NM_019265) sodium channel, voltage-gated, type11, alpha polypeptide; sodium channel, voltage-gated, type XI, alpha polypeptide [Rattus norvegicus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta] Tax_Id=10116 Sodium channel protein type XI alpha subunit [EBI-IPI_rat_3.05_04-04-2005_origrev.fasta] Sodium channel protein type 11 subunit alpha (Sodium channel protein type XI subunit alpha) (Voltage-gated sodium channel subunit alpha Nav1.9) (Sensory neuron sodium channel 2) (NaN) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] sodium channel, voltage-gated, type XI, alpha [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] voltage-gated sodium channel alpha subunit [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] voltage-gated Na channel alpha subunit NaN; tetrodotoxin-resistant voltage-gated Na channel; TTX-R voltage-gated Na channel [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Tax_Id=10116 VOLTAGE-GATED NA CHANNEL ALPHA SUBUNIT NAN [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta] sodium channel, voltage-gated, type11, alpha polypeptide [Rattus norvegicus] [nr-271106-contam.fasta] Sodium channel protein type 11 subunit alpha OS=Rattus norvegicus GN=Scn11a [011711_HMR.fasta]
Organism:	Rattus norvegicus
Length:	1765 amino acids
Gene Ontology:
Cellular Component:	membrane [IEA] integral to membrane [IEA] voltage-gated sodium channel complex [IEA]
Biological Process:	sodium ion transport [IEA] ion transport [IEA] transmembrane transport [IEA]
Molecular Function:	voltage-gated ion channel activity [IEA] voltage-gated sodium channel activity [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEERYYPVIF PDERNFRPFT SDSLAAIEKR IAIQKERKKS KDKAAAEPQP RPQLDLKASR  60
   61 KLPKLYGDIP PELVAKPLED LDPFYKDHKT FMVLNKKRTI YRFSAKRALF ILGPFNPLRS 120
  121 LMIRISVHSV FSMFIICTVI INCMFMANSM ERSFDNDIPE YVFIGIYILE AVIKILARGF 180
  181 IVDEFSFLRD PWNWLDFIVI GTAIATCFPG SQVNLSALRT FRVFRALKAI SVISGLKVIV 240
  241 GALLRSVKKL VDVMVLTLFC LSIFALVGQQ LFMGILNQKC IKHNCGPNPA SNKDCFEKEK 300
  301 DSEDFIMCGT WLGSRPCPNG STCDKTTLNP DNNYTKFDNF GWSFLAMFRV MTQDSWERLY 360
  361 RQILRTSGIY FVFFFVVVIF LGSFYLLNLT LAVVTMAYEE QNRNVAAETE AKEKMFQEAQ 420
  421 QLLREEKEAL VAMGIDRSSL NSLQASSFSP KKRKFFGSKT RKSFFMRGSK TAQASASDSE 480
  481 DDASKNPQLL EQTKRLSQNL PVDLFDEHVD PLHRQRALSA VSILTITMQE QEKFQEPCFP 540
  541 CGKNLASKYL VWDCSPQWLC IKKVLRTIMT DPFTELAITI CIIINTVFLA VEHHNMDDNL 600
  601 KTILKIGNWV FTGIFIAEMC LKIIALDPYH YFRHGWNVFD SIVALLSLAD VLYNTLSDNN 660
  661 RSFLASLRVL RVFKLAKSWP TLNTLIKIIG HSVGALGNLT VVLTIVVFIF SVVGMRLFGT 720
  721 KFNKTAYATQ ERPRRRWHMD NFYHSFLVVF RILCGEWIEN MWGCMQDMDG SPLCIIVFVL 780
  781 IMVIGKLVVL NLFIALLLNS FSNEEKDGSL EGETRKTKVQ LALDRFRRAF SFMLHALQSF 840
  841 CCKKCRRKNS PKPKETTESF AGENKDSILP DARPWKEYDT DMALYTGQAG APLAPLAEVE 900
  901 DDVEYCGEGG ALPTSQHSAG VQAGDLPPET KQLTSPDDQG VEMEVFSEED LHLSIQSPRK 960
  961 KSDAVSMLSE CSTIDLNDIF RNLQKTVSPK KQPDRCFPKG LSCHFLCHKT DKRKSPWVLW1020
 1021 WNIRKTCYQI VKHSWFESFI IFVILLSSGA LIFEDVNLPS RPQVEKLLRC TDNIFTFIFL1080
 1081 LEMILKWVAF GFRRYFTSAW CWLDFLIVVV SVLSLMNLPS LKSFRTLRAL RPLRALSQFE1140
 1141 GMKVVVYALI SAIPAILNVL LVCLIFWLVF CILGVNLFSG KFGRCINGTD INMYLDFTEV1200
 1201 PNRSQCNISN YSWKVPQVNF DNVGNAYLAL LQVATYKGWL EIMNAAVDSR EKDEQPDFEA1260
 1261 NLYAYLYFVV FIIFGSFFTL NLFIGVIIDN FNQQQKKLGG QDIFMTEEQK KYYNAMKKLG1320
 1321 TKKPQKPIPR PLNKCQAFVF DLVTSQVFDV IILGLIVLNM IIMMAESADQ PKDVKKTFDI1380
 1381 LNIAFVVIFT IECLIKVFAL RQHYFTNGWN LFDCVVVVLS IISTLVSRLE DSDISFPPTL1440
 1441 FRVVRLARIG RILRLVRAAR GIRTLLFALM MSLPSLFNIG LLLFLVMFIY AIFGMSWFSK1500
 1501 VKKGSGIDDI FNFETFTGSM LCLFQITTSA GWDTLLNPML EAKEHCNSSS QDSCQQPQIA1560
 1561 VVYFVSYIII SFLIVVNMYI AVILENFNTA TEESEDPLGE DDFEIFYEVW EKFDPEASQF1620
 1621 IQYSALSDFA DALPEPLRVA KPNKFQFLVM DLPMVMGDRL HCMDVLFAFT TRVLGDSSGL1680
 1681 DTMKTMMEEK FMEANPFKKL YEPIVTTTKR KEEEQGAAVI QRAYRKHMEK MVKLRLKDRS1740
 1741 SSSHQVFCNG DLSSLDVAKV KVHND

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein Overview: SCNBA_RAT

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: