YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCNBA_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	124	0.78
Transmembrane Helix	125	148	0.86
Non-Cytoplasmic	149	193	0.43
Transmembrane Helix	194	215	0.87
Cytoplasmic	216	223	0.53
Transmembrane Helix	224	245	0.74
Non-Cytoplasmic	246	252	0.43
Transmembrane Helix	253	273	0.89
Cytoplasmic	274	366	0.54
Transmembrane Helix	367	389	0.88
Non-Cytoplasmic	390	572	0.55
Transmembrane Helix	573	594	0.76
Cytoplasmic	595	605	0.50
Transmembrane Helix	606	626	0.89
Non-Cytoplasmic	627	698	0.57
Transmembrane Helix	699	720	0.87
Cytoplasmic	721	740	0.91
Transmembrane Helix	741	759	0.88
Non-Cytoplasmic	760	772	0.78
Transmembrane Helix	773	796	0.88
Cytoplasmic	797	1032	0.93
Transmembrane Helix	1033	1053	0.83
Non-Cytoplasmic	1054	1073	0.74
Transmembrane Helix	1074	1090	0.64
Cytoplasmic	1091	1098	0.43
Transmembrane Helix	1099	1121	0.87
Non-Cytoplasmic	1122	1144	0.50
Transmembrane Helix	1145	1178	0.76
Cytoplasmic	1179	1263	0.66
Transmembrane Helix	1264	1285	0.92
Non-Cytoplasmic	1286	1345	0.71
Transmembrane Helix	1346	1365	0.87
Cytoplasmic	1366	1377	0.69
Transmembrane Helix	1378	1400	0.89
Non-Cytoplasmic	1401	1407	0.66
Transmembrane Helix	1408	1427	0.83
Cytoplasmic	1428	1458	0.61
Transmembrane Helix	1459	1473	0.54
Non-Cytoplasmic	1474	1474	0.40
Transmembrane Helix	1475	1498	0.80
Cytoplasmic	1499	1509	0.56
Transmembrane Helix	1510	1532	0.64
Non-Cytoplasmic	1533	1558	0.55
Transmembrane Helix	1559	1583	0.86
Cytoplasmic	1584	1765	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEERYYPVIF PDERNFRPFT SDSLAAIEKR IAIQKERKKS KDKAAAEPQP RPQLDLKASR  60
   61 KLPKLYGDIP PELVAKPLED LDPFYKDHKT FMVLNKKRTI YRFSAKRALF ILGPFNPLRS 120
  121 LMIRISVHSV FSMFIICTVI INCMFMANSM ERSFDNDIPE YVFIGIYILE AVIKILARGF 180
  181 IVDEFSFLRD PWNWLDFIVI GTAIATCFPG SQVNLSALRT FRVFRALKAI SVISGLKVIV 240
  241 GALLRSVKKL VDVMVLTLFC LSIFALVGQQ LFMGILNQKC IKHNCGPNPA SNKDCFEKEK 300
  301 DSEDFIMCGT WLGSRPCPNG STCDKTTLNP DNNYTKFDNF GWSFLAMFRV MTQDSWERLY 360
  361 RQILRTSGIY FVFFFVVVIF LGSFYLLNLT LAVVTMAYEE QNRNVAAETE AKEKMFQEAQ 420
  421 QLLREEKEAL VAMGIDRSSL NSLQASSFSP KKRKFFGSKT RKSFFMRGSK TAQASASDSE 480
  481 DDASKNPQLL EQTKRLSQNL PVDLFDEHVD PLHRQRALSA VSILTITMQE QEKFQEPCFP 540
  541 CGKNLASKYL VWDCSPQWLC IKKVLRTIMT DPFTELAITI CIIINTVFLA VEHHNMDDNL 600
  601 KTILKIGNWV FTGIFIAEMC LKIIALDPYH YFRHGWNVFD SIVALLSLAD VLYNTLSDNN 660
  661 RSFLASLRVL RVFKLAKSWP TLNTLIKIIG HSVGALGNLT VVLTIVVFIF SVVGMRLFGT 720
  721 KFNKTAYATQ ERPRRRWHMD NFYHSFLVVF RILCGEWIEN MWGCMQDMDG SPLCIIVFVL 780
  781 IMVIGKLVVL NLFIALLLNS FSNEEKDGSL EGETRKTKVQ LALDRFRRAF SFMLHALQSF 840
  841 CCKKCRRKNS PKPKETTESF AGENKDSILP DARPWKEYDT DMALYTGQAG APLAPLAEVE 900
  901 DDVEYCGEGG ALPTSQHSAG VQAGDLPPET KQLTSPDDQG VEMEVFSEED LHLSIQSPRK 960
  961 KSDAVSMLSE CSTIDLNDIF RNLQKTVSPK KQPDRCFPKG LSCHFLCHKT DKRKSPWVLW1020
 1021 WNIRKTCYQI VKHSWFESFI IFVILLSSGA LIFEDVNLPS RPQVEKLLRC TDNIFTFIFL1080
 1081 LEMILKWVAF GFRRYFTSAW CWLDFLIVVV SVLSLMNLPS LKSFRTLRAL RPLRALSQFE1140
 1141 GMKVVVYALI SAIPAILNVL LVCLIFWLVF CILGVNLFSG KFGRCINGTD INMYLDFTEV1200
 1201 PNRSQCNISN YSWKVPQVNF DNVGNAYLAL LQVATYKGWL EIMNAAVDSR EKDEQPDFEA1260
 1261 NLYAYLYFVV FIIFGSFFTL NLFIGVIIDN FNQQQKKLGG QDIFMTEEQK KYYNAMKKLG1320
 1321 TKKPQKPIPR PLNKCQAFVF DLVTSQVFDV IILGLIVLNM IIMMAESADQ PKDVKKTFDI1380
 1381 LNIAFVVIFT IECLIKVFAL RQHYFTNGWN LFDCVVVVLS IISTLVSRLE DSDISFPPTL1440
 1441 FRVVRLARIG RILRLVRAAR GIRTLLFALM MSLPSLFNIG LLLFLVMFIY AIFGMSWFSK1500
 1501 VKKGSGIDDI FNFETFTGSM LCLFQITTSA GWDTLLNPML EAKEHCNSSS QDSCQQPQIA1560
 1561 VVYFVSYIII SFLIVVNMYI AVILENFNTA TEESEDPLGE DDFEIFYEVW EKFDPEASQF1620
 1621 IQYSALSDFA DALPEPLRVA KPNKFQFLVM DLPMVMGDRL HCMDVLFAFT TRVLGDSSGL1680
 1681 DTMKTMMEEK FMEANPFKKL YEPIVTTTKR KEEEQGAAVI QRAYRKHMEK MVKLRLKDRS1740
 1741 SSSHQVFCNG DLSSLDVAKV KVHND