Protein Overview: S61A1_RAT

General Information:
Name(s) found:	S61A1_RAT [Swiss-Prot]
Description(s) found: Found 13 descriptions. SHOW ALL	Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus norvegicus GN=Sec61a1 PE=2 SV=2 [Swiss-Prot]
Organism:	Rattus norvegicus
Length:	476 amino acids
Gene Ontology:
Cellular Component:	endoplasmic reticulum membrane [IEA] rough microsome [IDA] membrane [IEA] integral to membrane [IEA] endoplasmic reticulum [IEA]
Biological Process:	transmembrane transport [IEA] response to interferon-gamma [IEP] protein transport [IEA]
Molecular Function:	protein binding [UNKNOWN] P-P-bond-hydrolysis-driven protein transmembrane transporter activity [IEA] ribosome binding [UNKNOWN][IEA] molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIKFLEVIK PFCVILPEIQ KPERKIQFKE KVLWTAITLF IFLVCCQIPL FGIMSSDSAD  60
   61 PFYWMRVILA SNRGTLMELG ISPIVTSGLI MQLLAGAKII EVGDTPKDRA LFNGAQKLFG 120
  121 MIITIGQSIV YVMTGMYGDP SEMGAGICLL ITIQLFVAGL IVLLLDELLQ KGYGLGSGIS 180
  181 LFIATNICET IVWKAFSPTT VNTGRGMEFE GAIIALFHLL ATRTDKVRAL REAFYRQNLP 240
  241 NLMNLIATIF VFAVVIYFQG FRVDLPIKSA RYRGQYNTYP IKLFYTSNIP IILQSALVSN 300
  301 LYVISQMLSA RFSGNLLVSL LGTWSDTSSG GPARAYPVGG LCYYLSPPES FGSVLEDPVH 360
  361 AVVYIVFMLG SCAFFSKTWI EVSGSSAKDV AKQLKEQQMV MRGHRETSMV HELNRYIPTA 420
  421 AAFGGLCIGA LSVLADFLGA IGSGTGILLA VTIIYQYFEI FVKEQSEVGS MGALLF

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
ribonucleoprotein binding	5.96221631042313	bayes_pls_golite062009
protein transporter activity	5.55929343005534	bayes_pls_golite062009
transporter activity	3.32223562584466	bayes_pls_golite062009
substrate-specific transporter activity	3.22714325269757	bayes_pls_golite062009
P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.12732472524264	bayes_pls_golite062009
macromolecule transmembrane transporter activity	2.12732472524264	bayes_pls_golite062009
protein transmembrane transporter activity	1.76187269823414	bayes_pls_golite062009
transmembrane transporter activity	1.67782980643723	bayes_pls_golite062009
binding	1.4562802789412	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.42890247609405	bayes_pls_golite062009
primary active transmembrane transporter activity	1.15847548838424	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	1.15316743403707	bayes_pls_golite062009
active transmembrane transporter activity	1.10003802565492	bayes_pls_golite062009
peptide transporter activity	1.01893828721893	bayes_pls_golite062009
protein binding	0.674651002700028	bayes_pls_golite062009

Source: Reynolds et al. 2008. Manuscript submitted

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..476]	PSI-BLAST	72.0	The structure of a protein conducting channel

Protein Overview: S61A1_RAT

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: