Protein Overview: NCBP1_RAT

General Information:
Name(s) found:	NCBP1_RAT [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|81882418\|sp\|Q56A27.1\|NCBP1_RAT RecName: Full=Nuclear cap-binding protein subunit 1 [NCBI NR] gi\|62339326\|ref\|NP_001014785.1\| nuclear cap binding protein subunit 1, 80kDa [Rattus norvegicus] [NCBI NR] gi\|62089490\|gb\|AAH92199.1\| Nuclear cap binding protein subunit 1, 80kDa [Rattus norvegicus] [NCBI NR] ref\|XP_216408.2\| similar to 80 kDa nuclear cap binding protein (NCBP 80 kDa subunit) (CBP80) [Rattus norvegicus] [NCBI NR] gi\|149045831\|gb\|EDL98831.1\| nuclear cap binding protein subunit 1, 80kDa [Rattus norvegicus] [NCBI NR] Nuclear cap-binding protein subunit 1 OS=Rattus norvegicus GN=Ncbp1 PE=1 SV=1 [Swiss-Prot] similar to 80 kDa nuclear cap binding protein (NCBP 80 kDa subunit) (CBP80) [HMR_022704-rand.fasta] similar to 80 kDa nuclear cap binding protein (NCBP 80 kDa subunit) (CBP80) [Rattus norvegicus] [nrdb_11152004_Chlamydomonas] Tax_Id=10116 Nuclear cap binding protein subunit 1, 80kDa [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta] Tax_Id=10116 Similar to 80 kDa nuclear cap binding protein (NCBP 80 kDa Subunit) (CBP80) [EBI-IPI_rat_3.05_04-04-2005_origrev.fasta] Nuclear cap-binding protein subunit 1 [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] nuclear cap binding protein subunit 1, 80kDa [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Nuclear cap binding protein subunit 1, 80kDa [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Tax_Id=10116 SIMILAR TO 80 KDA NUCLEAR CAP BINDING PROTEIN (NCBP 80 KDA SUBUNIT) (CBP80) [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta] Tax_Id=10116 Gene_Symbol=Ncbp1 Nuclear cap-binding protein subunit 1 [rat-ipi-250309-contam.fasta] Nuclear cap-binding protein subunit 1 OS=Rattus norvegicus GN=Ncbp1 [011711_HMR.fasta] Nuclear cap-binding protein subunit 1 OS=Rattus norvegicus GN=Ncbp1 PE=2 SV=1 [20141208_RAT.fasta]
Organism:	Rattus norvegicus
Length:	790 amino acids
Gene Ontology:
Cellular Component:	nucleus [UNKNOWN][ISS] mRNA cap binding complex [UNKNOWN][ISS] ribonucleoprotein complex [UNKNOWN][ISS] cytoplasm [IEA] cytosol [UNKNOWN] nucleoplasm [UNKNOWN]
Biological Process:	mRNA export from nucleus [UNKNOWN][ISS] RNA splicing [UNKNOWN][IEA] RNA metabolic process [IEA] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [UNKNOWN][ISS] mRNA capping [UNKNOWN][ISS] positive regulation of mRNA 3'-end processing [UNKNOWN][ISS] gene silencing by RNA [IEA] regulation of translational initiation [UNKNOWN][ISS] transport [IEA] spliceosomal snRNP assembly [UNKNOWN] mRNA cleavage [UNKNOWN][ISS]
Molecular Function:	protein binding [UNKNOWN][IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRRRHSYEN DGGQPHKRRK TSDANETEDH LESLICKVGE KSACSLESNL EGLAGVLEAD  60
   61 LPNYKSKILR LLCTVARLLP EKLTIYTTLV GLLNARNYNF GGEFVEAMIR QLKESLKANN 120
  121 YNEAVYLVRF LSDLVNCHVI AAPSMVAMFE NFVSVTQEED VPQVRRDWYV YAFLSSLPWV 180
  181 GKELYEKKDA EMDRIFSSTE SYLKRRQKTH VPMLQVWTAD KPHPQEEYLD CLWAQIQKLK 240
  241 KDRWQERHIL RPYLAFDSIL CEALQHNLPP FTPPPHTEDS VYPMPRVIFR MFDYTDDPEG 300
  301 PVMPGSHSVE RFVIEENLHC IIKSYWKERK TCAAQLVSYP GKNKIPLNYH IVEVIFAELF 360
  361 QLPAPPHIDV MYTTLLIELC KLQPGSLPQV LAQATEMLYM RLDTMSTTCV DRFINWFSHH 420
  421 LSNFQFRWSW EDWSDCLTQD LESPKPKFVR EVLEKCMRLS YHQHILDIVP PTFSALCPAN 480
  481 PTCIYKYGDE SSNSLPGHSV ALCLSVAFKS KATNDEIFSI LKDVPNPNQV DDDDEGFRFN 540
  541 PLKIEVFVQT LLHLAAKSFS HSFSALAKFH EVFKTLAESD KGKLHVLRVM FEVWRNHPQM 600
  601 IAVLVDKMIR TQIVDCAAVA NWIFSSELSR DFTRLFVWEI LHSTIRKMNK HVLKIQKELE 660
  661 EAKEKLARQH KRRSDDDDRG SDRKDGALEE QIERLQEKVE SAQSEQKNLF LVIFQRFIMI 720
  721 LTEHLVRCET DGTSILTPWY KNCIERLQQI FLQHHQIIQQ YMVTLENLLF TAELDPHILA 780
  781 VFQQFCALQA

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.96

Protein Overview: NCBP1_RAT

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: