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Protein Overview: RS13_RAT

General Information:
Name(s) found: RS13_RAT [Swiss-Prot]
Description(s) found:
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  • pir||R3RT13 ribosomal protein S13, cytosolic [validated] - rat [NCBI NR]
  • gi|54261703|gb|AAH84724.1| Ribosomal protein S13 [Rattus norvegicus] [NCBI NR]
  • gi|54039303|sp|P62278.2|RS13_RAT RecName: Full=40S ribosomal protein S13 [NCBI NR]
  • gi|39930505|ref|NP_569116.1| ribosomal protein S13 [Rattus norvegicus] [NCBI NR]
  • ref|XP_345331.1| similar to ribosomal protein S13 [Rattus norvegicus] [NCBI NR]
  • gi|149068185|gb|EDM17737.1| rCG39658, isoform CRA_b [Rattus norvegicus] [NCBI NR]
  • gi|109467936|ref|XP_001053043.1| PREDICTED: similar to ribosomal protein S13 [Rattus norvegicus] [NCBI NR]
  • 40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=1 SV=2 [Swiss-Prot]
  • similar to ribosomal protein S13 [HMR_022704-rand.fasta]
  • ribosomal protein S13 [HMR_022704-rand.fasta]
  • similar to ribosomal protein S13 [Rattus norvegicus]gi|55635357|ref|XP_508306.1| PREDICTED: similar to ribosomal protein S13 [Pan troglodytes]gi|488417|emb|CAA55821.1| ribosomal protein S13 [Homo sapiens]gi|39930505|ref|NP_569116.1| ribosomal protein S [nrdb_11152004_Chlamydomonas]
  • 40S ribosomal protein S13 [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • ribosomal protein S13 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG39658, isoform CRA_b [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Ribosomal protein S13 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • PREDICTED: similar to ribosomal protein S13 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 RIBOSOMAL PROTEIN S13 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10116 Gene_Symbol=Rps13;LOC684988 40S ribosomal protein S13 [rat-ipi-250309-contam.fasta]
  • 40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 [011711_HMR.fasta]
  • 40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=2 SV=2 [UNIPROT_RAT_07-21-2011_reversed.fasta]
    • Organism: Rattus norvegicus
    Length: 151 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN]
    cytosolic small ribosomal subunit [UNKNOWN][IDA]
    cytosol [UNKNOWN]
    nucleolus [UNKNOWN]
    ribosome [IEA]
    intracellular [IEA]
    Biological Process: biological_process [ND]
    negative regulation of RNA splicing [UNKNOWN]
    translational elongation [UNKNOWN]
    translation [IEA]
    Molecular Function: protein binding [UNKNOWN]
    structural constituent of ribosome [IEA]
    mRNA binding [UNKNOWN]
    molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRMHAPGKG LSQSALPYRR SVPTWLKLTS DDVKEQIYKL AKKGLTPSQI GVILRDSHGV  60
   61 AQVRFVTGNK ILRILKSKGL APDLPEDLYH LIKKAVAVRK HLERNRKDKD AKFRLILIES 120
  121 RIHRLARYYK TKRVLPPNWK YESSTASALV A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..60] Pfam 38.585027 No description for PF08069.3 was found. No confident structure predictions are available.
    2 View Details [61..151] PSI-BLAST 24.39794 Localization and dynamic behavior of ribosomal protein L30e


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle