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Protein Overview: Ama-PB

General Information:
Name(s) found: Ama-PB / FBpp0081135 [FlyBase]
Description(s) found:
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  • gi|45551839|ref|NP_731114.2| amalgam, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|45446406|gb|AAN13372.2| amalgam, isoform B [Drosophila melanogaster] [NCBI NR]
  • The gene Amalgam is referred to in FlyBase by the symbol Dmel\Ama (CG2198, FBgn0000071). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:2588315..2590983. It has the cytological map location 84A5. It is reported to have molecular function</span>: antigen binding. It is reported to be involved in the biological process</span>: cell adhesion. 8 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • (AAN13372) CG2198-PB [DrosMelano7227.FASTAC.txt]
  • CG2198-PB, isoform B [Drosophila melanogaster]gi|45551839|ref|NP_731114.2| CG2198-PB [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=3R:join(2588702..2588718,2589555..2590563); ID=FBpp0081135; name=Ama-PB; parent=FBgn0000071,FBtr0081618; dbxref=GB_protein:AAN13372.1,FlyBase:FBpp0081135,FlyBase_Annotation_IDs:CG2198-PB,GB_protein:AAN13372.2,REFSEQ:NP_731114,GB_protein: [fly-100309-contam.fasta]
  • CG2198-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Amalgam CG2198-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=3R:join(2588702..2588718,2589555..2590563); ID=FBpp0081135; name=Ama-PB; parent=FBgn0000071,FBtr0081618; dbxref=GB_protein:AAN13372.1,FlyBase:FBpp0081135,FlyBase_Annotation_IDs:CG2198-PB,GB_protein:AAN13372.2,REFSEQ:NP_731114,GB_protein:AAN13372; MD5=60b7051a040d3fda3dd2d979894c24e0; length=341; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=3R:join(2588702..2588718,2589555..2590563); ID=FBpp0081135; name=Ama-PB; parent=FBgn0000071,FBtr0081618; dbxref=GB_protein:AAN13372.1,FlyBase:FBpp0081135,FlyBase_Annotation_IDs:CG2198-PB,GB_protein:AAN13372.2,REFSEQ:NP_731114,GB_protein:AAN13372; MD5=60b7051a040d3fda3dd2d979894c24e0; length=341; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Amalgam, isoform B OS=Drosophila melanogaster GN=Ama PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=3R:join(2588702..2588718,2589555..2590563); ID=FBpp0081135; name=Ama-PB; parent=FBgn0000071,FBtr0081618; dbxref=GB_protein:AAN13372.1,FlyBase:FBpp0081135,FlyBase_Annotation_IDs:CG2198-PB,GB_protein:AAN13372.2,REFSEQ:NP_731114,GB_protein:AAN13372,FlyMine:FBpp0081135,modMine:FBpp0081135; MD5=60b7051a040d3fda3dd2d979894c24e0; length=341; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=3R:join(6762980..6762996,6763833..6764841); ID=FBpp0081135; name=Ama-PB; parent=FBgn0000071,FBtr0081618; dbxref=GB_protein:AAN13372.1,FlyBase:FBpp0081135,FlyBase_Annotation_IDs:CG2198-PB,GB_protein:AAN13372.2,REFSEQ:NP_731114,GB_protein:AAN13372,FlyMine:FBpp0081135,modMine:FBpp0081135; MD5=60b7051a040d3fda3dd2d979894c24e0; length=341; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=3R:join(6762980..6762996,6763833..6764841); ID=FBpp0081135; name=Ama-PB; parent=FBgn0000071,FBtr0081618; dbxref=GB_protein:AAN13372.1,FlyBase:FBpp0081135,FlyBase_Annotation_IDs:CG2198-PB,GB_protein:AAN13372.2,REFSEQ:NP_731114,GB_protein:AAN13372,FlyMine:FBpp0081135,modMine:FBpp0081135; MD5=60b7051a040d3fda3dd2d979894c24e0; length=341; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of P15364, Amalgam, isoform B OS=Drosophila melanogaster GN=Ama PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0081135 type=protein; loc=3R:join(6762980..6762996,6763833..6764841); ID=FBpp0081135; name=Ama-PB; parent=FBgn0000071,FBtr0081618; dbxref=GB_protein:AAN13372.1,FlyBase:FBpp0081135,FlyBase_Annotation_IDs:CG2198-PB,GB_protein:AAN13372.2,REFSEQ:NP_731114,GB_protein:AAN13372,FlyMine:FBpp0081135,modMine:FBpp0081135; MD5=60b7051a040d3fda3dd2d979894c24e0; length=341; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=3R:join(6762980..6762996,6763833..6764841); ID=FBpp0081135; name=Ama-PB; parent=FBgn0000071,FBtr0081618; dbxref=GB_protein:AAN13372.1,FlyBase:FBpp0081135,FlyBase_Annotation_IDs:CG2198-PB,GB_protein:AAN13372.2,REFSEQ:NP_731114,GB_protein:AAN13372,UniProt/TrEMBL:Q7KSX2,FlyMine:FBpp0081135,modMine:FBpp0081135; MD5=60b7051a040d3fda3dd2d979894c24e0; length=341; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 341 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYNKRPDMA RLRLLIGLIF CLAISLDSVL SAPVISQISK DVVASVGDSV EFNCTVEEVG  60
   61 QLSVSWAKRP SESDTNSVVL SMRNILSLPD QRYNVTVTEG PKTGSAIYTF RIQNIEVSDM 120
  121 GPYECQVLVS ATEKVTKKLS LQIKTPPVIA ENTPKSTLVT EGQNLELTCH ANGFPKPTIS 180
  181 WAREHNAVMP AGGHLLAEPT LRIRSVHRMD RGGYYCIAQN GEGQPDKRLI RVEVEFRPQI 240
  241 AVQRPKIAQM VSHSAELECS VQGYPAPTVV WHKNGVPLQS SRHHEVANTA SSSGTTTSVL 300
  301 RIDSVGEEDF GDYYCNATNK LGHADARLHL FQTVIPVPSL S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..341] PSI-BLAST 42.39794 Axonin-1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.33804459527604 bayes_pls_golite062009
  • receptor activity
    		•  1.90298241148243 bayes_pls_golite062009
  • signal transducer activity
    		•  1.59395248964472 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.59395248964472 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  1.5023290800351 bayes_pls_golite062009
  • fibroblast growth factor 1 binding
    		•  1.39482409678992 bayes_pls_golite062009
  • cell adhesion molecule binding
    		•  1.36789541796983 bayes_pls_golite062009
  • fibroblast growth factor receptor activity
    		•  1.13671712991988 bayes_pls_golite062009
  • protein binding
    		•  1.0782734177126 bayes_pls_golite062009
  • fibroblast growth factor binding
    		•  0.646668003618218 bayes_pls_golite062009
  • integrin binding
    		•  0.599569390248921 bayes_pls_golite062009
  • IgG binding
    		•  0.16605827100416 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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