YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Ama-PB
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYNKRPDMA RLRLLIGLIF CLAISLDSVL SAPVISQISK DVVASVGDSV EFNCTVEEVG  60
   61 QLSVSWAKRP SESDTNSVVL SMRNILSLPD QRYNVTVTEG PKTGSAIYTF RIQNIEVSDM 120
  121 GPYECQVLVS ATEKVTKKLS LQIKTPPVIA ENTPKSTLVT EGQNLELTCH ANGFPKPTIS 180
  181 WAREHNAVMP AGGHLLAEPT LRIRSVHRMD RGGYYCIAQN GEGQPDKRLI RVEVEFRPQI 240
  241 AVQRPKIAQM VSHSAELECS VQGYPAPTVV WHKNGVPLQS SRHHEVANTA SSSGTTTSVL 300
  301 RIDSVGEEDF GDYYCNATNK LGHADARLHL FQTVIPVPSL S

Type	Start	End	Confidence
Signal Peptide	1	31	0.89
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	341	0.99