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Protein Overview: FBpp0307125, Trn...

General Information:
Name(s) found: FBpp0307125 [FlyBase]
Trn-SR-PA / FBpp0077399 [FlyBase]
Description(s) found:
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  • gi|45550109|ref|NP_608708.2| Transportin-Serine/Arginine rich [Drosophila melanogaster] [NCBI NR]
  • gi|45444966|gb|AAF51214.2| Transportin-Serine/Arginine rich [Drosophila melanogaster] [NCBI NR]
  • gi|20177035|gb|AAM12279.1| LD21546p [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=2L:join(2760033..2760146,2760217..2761308,2761504..2761670,2761724..2763088,2763151..2763211); ID=FBpp0307125; name=Trn-SR-PB; parent=FBgn0031456,FBtr0335126; dbxref=FlyBase:FBpp0307125,REFSEQ:NP_001259961,GB_protein:AGB92498,FlyBase_Annotation_IDs:CG2848-PB; MD5=4e7779c0bf0edbb644bc17bb9a10a4d7; length=932; release=r5.56; species=Dmel; [FlyBase]
  • The gene Transportin-Serine/Arginine rich is referred to in FlyBase by the symbol Dmel\Trn-SR (CG2848, FBgn0031456). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:2759915..2763610. It has the cytological map location 23A3-23A5. There is experimental evidence that it has the molecular function</span>: protein binding. There is experimental evidence that it is involved in the biological process</span>: splicing factor protein import into nucleus; regulation of nuclear mRNA splicing, via spliceosome. 6 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • (AAF51214) CG2848-PA [DrosMelano7227.FASTAC.txt]
  • CG2848-PA [Drosophila melanogaster]gi|20177035|gb|AAM12279.1| LD21546p [Drosophila melanogaster]gi|45550109|ref|NP_608708.2| CG2848-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:join(2760033..2760146,2760217..2761308,2761504..2761670,2761724..2763088,2763151..2763211); ID=FBpp0077399; name=Trn-SR-PA; parent=FBgn0031456,FBtr0077715; dbxref=GB_protein:AAF51214.1,FlyBase:FBpp0077399,FlyBase_Annotation_IDs:CG2848 [fly-100309-contam.fasta]
  • LD21546p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG2848-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Transportin-Serine/Arginine rich CG2848-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2L:join(2760033..2760146,2760217..2761308,2761504..2761670,2761724..2763088,2763151..2763211); ID=FBpp0077399; name=Trn-SR-PA; parent=FBgn0031456,FBtr0077715; dbxref=GB_protein:AAF51214.1,FlyBase:FBpp0077399,FlyBase_Annotation_IDs:CG2848-PA,GB_protein:AAF51214.2,REFSEQ:NP_608708,GB_protein:AAF51214; MD5=4e7779c0bf0edbb644bc17bb9a10a4d7; length=932; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:join(2760033..2760146,2760217..2761308,2761504..2761670,2761724..2763088,2763151..2763211); ID=FBpp0077399; name=Trn-SR-PA; parent=FBgn0031456,FBtr0077715; dbxref=GB_protein:AAF51214.1,FlyBase:FBpp0077399,FlyBase_Annotation_IDs:CG2848-PA,GB_protein:AAF51214.2,REFSEQ:NP_608708,GB_protein:AAF51214; MD5=4e7779c0bf0edbb644bc17bb9a10a4d7; length=932; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • LD21546p OS=Drosophila melanogaster GN=Trn-SR PE=1 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2L:join(2760033..2760146,2760217..2761308,2761504..2761670,2761724..2763088,2763151..2763211); ID=FBpp0077399; name=Trn-SR-PA; parent=FBgn0031456,FBtr0077715; dbxref=GB_protein:AAF51214.1,FlyBase:FBpp0077399,FlyBase_Annotation_IDs:CG2848-PA,GB_protein:AAF51214.2,REFSEQ:NP_608708,GB_protein:AAF51214,FlyMine:FBpp0077399,modMine:FBpp0077399; MD5=4e7779c0bf0edbb644bc17bb9a10a4d7; length=932; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • LD21546p OS=Drosophila melanogaster GN=Trn-SR PE=2 SV=2 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2L:join(2760033..2760146,2760217..2761308,2761504..2761670,2761724..2763088,2763151..2763211); ID=FBpp0077399; name=Trn-SR-PA; parent=FBgn0031456,FBtr0077715; dbxref=GB_protein:AAF51214.1,FlyBase:FBpp0077399,FlyBase_Annotation_IDs:CG2848-PA,GB_protein:AAF51214.2,REFSEQ:NP_608708,GB_protein:AAF51214,FlyMine:FBpp0077399,modMine:FBpp0077399; MD5=4e7779c0bf0edbb644bc17bb9a10a4d7; length=932; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:join(2760033..2760146,2760217..2761308,2761504..2761670,2761724..2763088,2763151..2763211); ID=FBpp0307125; name=Trn-SR-PB; parent=FBgn0031456,FBtr0335126; dbxref=FlyBase:FBpp0307125,REFSEQ:NP_001259961,GB_protein:AGB92498,FlyBase_Annotation_IDs:CG2848-PB; MD5=4e7779c0bf0edbb644bc17bb9a10a4d7; length=932; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:join(2760033..2760146,2760217..2761308,2761504..2761670,2761724..2763088,2763151..2763211); ID=FBpp0077399; name=Trn-SR-PA; parent=FBgn0031456,FBtr0077715; dbxref=GB_protein:AAF51214.1,FlyBase:FBpp0077399,FlyBase_Annotation_IDs:CG2848-PA,GB_protein:AAF51214.2,REFSEQ:NP_608708,GB_protein:AAF51214,FlyMine:FBpp0077399,modMine:FBpp0077399; MD5=4e7779c0bf0edbb644bc17bb9a10a4d7; length=932; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2L:join(2760033..2760146,2760217..2761308,2761504..2761670,2761724..2763088,2763151..2763211); ID=FBpp0307125; name=Trn-SR-PB; parent=FBgn0031456,FBtr0335126; dbxref=FlyBase:FBpp0307125,REFSEQ:NP_001259961,GB_protein:AGB92498,FlyBase_Annotation_IDs:CG2848-PB; MD5=4e7779c0bf0edbb644bc17bb9a10a4d7; length=932; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0077399 type=protein; loc=2L:join(2760033..2760146,2760217..2761308,2761504..2761670,2761724..2763088,2763151..2763211); ID=FBpp0077399; name=Trn-SR-PA; parent=FBgn0031456,FBtr0077715; dbxref=GB_protein:AAF51214.1,FlyBase:FBpp0077399,FlyBase_Annotation_IDs:CG2848-PA,GB_protein:AAF51214.2,REFSEQ:NP_608708,GB_protein:AAF51214,FlyMine:FBpp0077399,modMine:FBpp0077399; MD5=4e7779c0bf0edbb644bc17bb9a10a4d7; length=932; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0307125 type=protein; loc=2L:join(2760033..2760146,2760217..2761308,2761504..2761670,2761724..2763088,2763151..2763211); ID=FBpp0307125; name=Trn-SR-PB; parent=FBgn0031456,FBtr0335126; dbxref=FlyBase:FBpp0307125,REFSEQ:NP_001259961,GB_protein:AGB92498,FlyBase_Annotation_IDs:CG2848-PB; MD5=4e7779c0bf0edbb644bc17bb9a10a4d7; length=932; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:join(2760033..2760146,2760217..2761308,2761504..2761670,2761724..2763088,2763151..2763211); ID=FBpp0077399; name=Trn-SR-PA; parent=FBgn0031456,FBtr0077715; dbxref=GB_protein:AAF51214.1,FlyBase:FBpp0077399,FlyBase_Annotation_IDs:CG2848-PA,GB_protein:AAF51214.2,REFSEQ:NP_608708,GB_protein:AAF51214,UniProt/TrEMBL:Q9VQG0,FlyMine:FBpp0077399,modMine:FBpp0077399; MD5=4e7779c0bf0edbb644bc17bb9a10a4d7; length=932; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2L:join(2760033..2760146,2760217..2761308,2761504..2761670,2761724..2763088,2763151..2763211); ID=FBpp0307125; name=Trn-SR-PB; parent=FBgn0031456,FBtr0335126; dbxref=FlyBase:FBpp0307125,REFSEQ:NP_001259961,GB_protein:AGB92498,FlyBase_Annotation_IDs:CG2848-PB,UniProt/TrEMBL:Q9VQG0; MD5=4e7779c0bf0edbb644bc17bb9a10a4d7; length=932; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 932 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytoplasm [IDA]
    Biological Process: mRNA export from nucleus [ISS]
    protein import into nucleus [ISS]
    regulation of nuclear mRNA splicing, via spliceosome [IPI]
    splicing factor protein import into nucleus [IDA][IPI]
    Molecular Function: protein binding [IPI]
    protein transporter activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTYSVDVVY QAISALFQGN NPKEQEKANK WLQDFQKSIY SWTIADELLH QKRDLHANYF  60
   61 AAQTMRNKIQ NSFSELPPHT HESLRDSLIT HIGQIDEQTD NVIVTQLSLA VADLALLMAS 120
  121 WREPINDLLV TLAPHQCAIW PLLEVLKVLP EEIDSRYLRL GANRREEVHK QLDASAECVL 180
  181 KFLCMCLQRE DLDQQRVWNA ALRTYSAWLV IHAFPVSHVY NNALTQLAFR LLSLPETSGK 240
  241 LHDNATECVC ALLSCINTRQ DGASDPESSF EAQLFGAVCM LETPYHLSVA HEDTDKTINY 300
  301 CRIFTSLCDA FFYDLLADAQ KPHYSLKGLD LVLLCVGHFD YEVAEITFHL WYKLSEDLFQ 360
  361 RNEDKLTVLF RPHIERLISA LFRHSQMESD HDGLIEENNN FFDFRRKVSD LIKDVAFIVG 420
  421 SGACFKQMFH ILQAPETTWE STEAALFIMQ NVAKNILPDE NEVIPKVVEA ILNMSEQTHI 480
  481 AVRYTAILLI GELCDWIENH PESLEAVLNF LLYALQQKNG LAPAAAIALT SICSACRQKM 540
  541 VCHISGLVEI ARSLDSFQIN NDVAIGLLKG ISLILTRLPR EQLQPALREI VGFQLQPLAQ 600
  601 LVDSTGSTPQ KGERTDPVYW IDRACAIIRH TNPDVPDNVE HPTVAILNDA WQLISRVMDK 660
  661 YQSDLRIMER TCRLIRYGIR MVRKQAMMLV EPLIKQMVVL YSVQHHSCFL YVGSILVDEF 720
  721 AKSSECIGGL LEMLQAFIEP TFGLLQMENG LKNNPDTVDD FFRLASRYLD CCPHQLLQSS 780
  781 LITPIFQCAL IACSLDHREA NSSVMKFFIN LLVWGRSNNH SRNTECRPLV VELASQHGGA 840
  841 LVMNLIQASV FQLHSYMLVD VAEVLHELKQ VVGNERMQPF LAQALEALPK KNSGGYVTAT 900
  901 QQQLDEFSST VLRADTTKAI SQALKTFTRL FR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle