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Protein Overview: gi|119596571, gi...

General Information:
Name(s) found: gi|35493829 [NCBI NR]
gi|35493817 [NCBI NR]
gi|119596571 [NCBI NR]
gi|119596566 [NCBI NR]
Description(s) found:
Found 27 descriptions.
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  • gi|35493829|ref|NP_909132.1| RNA binding motif protein 39 isoform c [Homo sapiens] [NCBI NR]
  • gi|35493817|ref|NP_909125.1| RNA binding motif protein 39 isoform c [Homo sapiens] [NCBI NR]
  • gi|119596571|gb|EAW76165.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b [Homo sapiens] [NCBI NR]
  • gi|119596566|gb|EAW76160.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b [Homo sapiens] [NCBI NR]
    • Organism: Homo sapiens
    Length: 373 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLAARIRPR DLEEFFSTVG KVRDVRMISD RNSRRSKGIA YVEFVDVSSV PLAIGLTGQR  60
   61 VLGVPIIVQA SQAEKNRAAA MANNLQKGSA GPMRLYVGSL HFNITEDMLR GIFEPFGRIE 120
  121 SIQLMMDSET GRSKGYGFIT FSDSECAKKA LEQLNGFELA GRPMKVGHVT ERTDASSASS 180
  181 FLDSDELERT GIDLGTTGRL QLMARLAEGT GLQIPPAAQQ ALQMSGSLAF GAVAEFSFVI 240
  241 DLQTRLSQQT EASALAAAAS VQPLATQCFQ LSNMFNPQTE EEVGWDTEIK DDVIEECNKH 300
  301 GGVIHIYVDK NSAQGNVYVK CPSIAAAIAA VNALHGRWFA GKMITAAYVP LPTYHNLFPD 360
  361 SMTATQLLVP SRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run None Entered Sample pIC145 from april 2005 Okada, M., et al. (2006)
    View Run gi|14317902, gi|... No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..86] FFAS03 4.82 No description for 2dgsA was found.
    2 View Details [87..176] PSI-BLAST 22.522879 No description for 2jrsA was found.
    3 View Details [177..239] deduced N/A No confident structure predictions are available.
    4 View Details [240..373] PSI-BLAST 5.30103 No description for 2ditA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • RNA binding
    		•  6.73097473547076 bayes_pls_golite062009
    		• 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
    		•  5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.92126426323641 bayes_pls_golite062009
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
  • snRNA binding
    		•  3.28448936696877 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  3.11990160533699 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.93798024346416 bayes_pls_golite062009
  • U1 snRNA binding
    		•  2.26303528058407 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.92450390013691 bayes_pls_golite062009
  • DNA binding
    		•  1.8021593476478 bayes_pls_golite062009
  • structural molecule activity
    		•  1.29928829870122 bayes_pls_golite062009
  • transcription factor activity
    		•  1.15127506309683 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.383589644462932 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.80

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle