Protein Overview: retr-1

General Information:
Name(s) found:	retr-1 / CE41402 [WormBase]
Description(s) found: SHOW ONLY BEST	WBGene00018416 locus:retr-1 Retrotransposon-like protein 1 status:Confirmed UniProt:P34431 protein_id:CCD71231.1 [WormBase] gi\|221222540\|sp\|P34431.5\|RETR1_CAEEL RecName: Full=Retrotransposon-like protein 1 [NCBI NR] gi\|193205782\|ref\|NP_871637.2\| RETRotransposon-like family member (retr-1) [Caenorhabditis elegans] [NCBI NR] gi\|154690545\|gb\|AAN84801.2\| Retrotransposon-like protein 1, isoform c, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR] Retrotransposon-like protein 1 OS=Caenorhabditis elegans GN=retr-1 PE=4 SV=5 [Swiss-Prot] CE41402 WBGene00018416 locus:retr-1 status:Confirmed UniProt:Q8I7K0_CAEEL protein_id:AAN84801.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta] CE41402 WBGene00018416 locus:retr-1 status:Confirmed UniProt:Q8I7K0_CAEEL protein_id:AAN84801.2\| [wormORF-contam.fasta] CE41402 WBGene00018416 locus:retr-1 status:Confirmed TR:Q8I7K0 protein_id:AAN84801.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta] CE41402 WBGene00018416 locus:retr-1 status:Confirmed UniProt:P34431 protein_id:AAN84801.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta] [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr] CE41402 WBGene00018416 locus:retr-1 status:Confirmed UniProt:P34431 protein_id:CCD71231.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta] CE41402 WBGene00018416 locus:retr-1 status:Confirmed UniProt:P34431 protein_id:CCD71231.1 Retrotransposon-like protein 1 [wormpep246-ecoli-contam.fasta]
Organism:	Caenorhabditis elegans
Length:	517 amino acids
Gene Ontology:
Cellular Component:	proteinaceous extracellular matrix [IEA]
Biological Process:	proteolysis [IEA] DNA integration [IEA] RNA-dependent DNA replication [IEA] cell adhesion [IEA] blood coagulation [IEA]
Molecular Function:	nucleic acid binding [IEA] DNA binding [IEA] RNA-directed DNA polymerase activity [IEA] zinc ion binding [IEA] RNA binding [IEA] aspartic-type endopeptidase activity [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVNEGQDTE GGSSRAQTLT PPPNPQQQLY DEEDLLRESM DTTEKTFENG FQIQKEQIRQ  60
   61 HLQDSSQRGT AEDAETQKMK QFLDTNELHN MASDSWAMMR EEIMEKRETN RDLNRQLKEK 120
  121 SEELMQKSQI LVETTLKLKA VEEERDKRKK EEQFREADAR SNNYARKDHG YKMHNIELKN 180
  181 EYTSTTYRCR YICRCALKPC MFNMTLVPEA HTPSPTQLYR MYCIMEKSGN RKIDPKQLMA 240
  241 MSSRPLPSPL QITLPDKMMD NLFKDMIGCS SLWTYVAELG WENSYNRYVD KLLNENCGDI 300
  301 LNGPGTMLIL ADGLRLEDLP VSTKNCFVCT DYDEETLIAL QKKCCRERFK MIVLVIPFTI 360
  361 DVELVDCWNR LIAKISEETK ILVVSNMTPD ELEDHALLVE FTSILQKCRR VDDGYLEIIS 420
  421 LHDRLEAHPR KTLEMTALAG KVEYWKAVQT RAKEVGMEWK AFELKRCTSD TPVKNSDCEA 480
  481 STSMKSASTV RTFEDRMVKR GNHNRVYHHF TPYGRKK

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..195]	PSI-BLAST	20.0	Heavy meromyosin subfragment
2	View Details	[196..296]	PSI-BLAST	6.045757	No description for 2repA was found.
3	View Details	[297..517]	deduced	N/A	No confident structure predictions are available.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Protein Overview: retr-1

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: